Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2453g0240 Pisum sativum HOM05D001817 ORTHO05D001647 1.3e-35 152.5 75 100.0
Psat0s2453g0120 Pisum sativum HOM05D001817 ORTHO05D001647 1.5e-33 145.6 74 97.3
Psat0s2453g0040 Pisum sativum HOM05D001817 ORTHO05D001647 6.1e-30 133.7 74 87.8
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 2.0e-17 92.0 73 63.0
Psat0s2453g0200 Pisum sativum HOM05D001817 ORTHO05D001647 6.5e-16 87.0 41 100.0
Psat0s2453g0080 Pisum sativum HOM05D001817 ORTHO05D001647 1.9e-15 85.5 75 58.7
Psat3g204760 Pisum sativum HOM05D001817 ORTHO05D001647 3.2e-15 84.7 72 56.9
TPR.G3968 Trifolium pratense HOM05D001817 ORTHO05D001647 1.3e-11 72.8 74 52.7
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 2.2e-11 72.0 77 44.2
TPR.G35350 Trifolium pratense HOM05D001817 ORTHO05D001647 4.8e-11 70.9 74 50.0
TPR.G3970 Trifolium pratense HOM05D001817 ORTHO05D001647 1.1e-10 69.7 74 51.4
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.8e-10 68.9 77 45.5
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.8e-10 68.9 77 45.5
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.4e-10 68.6 77 44.2
TPR.G35354 Trifolium pratense HOM05D001817 ORTHO05D001647 3.1e-10 68.2 75 49.3
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 7.0e-10 67.0 76 42.1
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 7.0e-10 67.0 76 42.1
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 1.2e-09 66.2 77 42.9
Sed0025130 Sechium edule HOM05D001817 ORTHO05D001647 1.2e-09 66.2 76 44.7
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.6e-09 65.9 75 42.7
Sed0010450 Sechium edule HOM05D001817 ORTHO05D001647 1.6e-09 65.9 74 44.6
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 2.0e-09 65.5 77 41.6
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-09 64.7 72 45.8
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 4.5e-09 64.3 77 42.9
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 5.9e-09 63.9 77 42.9
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 7.7e-09 63.5 76 39.5
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 7.7e-09 63.5 77 45.5
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 1.0e-08 63.2 78 41.0
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.3e-08 62.8 77 42.9
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 1.7e-08 62.4 76 42.1
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 2.2e-08 62.0 78 46.2
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 2.2e-08 62.0 72 43.1
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.9e-08 61.6 77 42.9
Lj4g0014854 Lotus japonicus HOM05D001817 ORTHO05D001647 2.9e-08 61.6 76 43.4
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 2.9e-08 61.6 78 42.3
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.9e-08 61.6 76 40.8
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 3.8e-08 61.2 75 42.7
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 3.8e-08 61.2 76 43.4
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 3.8e-08 61.2 76 38.2
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 3.8e-08 61.2 76 38.2
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 3.8e-08 61.2 76 38.2
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 5.0e-08 60.8 76 39.5
Lj6g0004190 Lotus japonicus HOM05D001817 ORTHO05D001647 6.5e-08 60.5 78 42.3
VMungo0464G0399 Vigna mungo HOM05D001817 ORTHO05D001647 6.5e-08 60.5 77 40.3
EL10Ac2g04174 Beta vulgaris HOM05D001817 ORTHO05D001647 8.5e-08 60.1 79 43.0
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 8.5e-08 60.1 72 44.4
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 8.5e-08 60.1 77 40.3
Glyma.10G113900 Glycine max HOM05D001817 ORTHO05D001647 1.1e-07 59.7 77 44.2
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 1.5e-07 59.3 77 39.0
Zm00001eb170490 Zea mays HOM05D001817 ORTHO05D001647 1.5e-07 59.3 78 47.4
Zm00001eb170500 Zea mays HOM05D001817 ORTHO05D001647 1.5e-07 59.3 78 47.4
Zm00001eb307030 Zea mays HOM05D001817 ORTHO05D001647 1.5e-07 59.3 78 47.4
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 1.9e-07 58.9 73 45.2
Phvul.001G045800 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.9e-07 58.9 75 44.0
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.9e-07 58.9 76 39.5
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 4.2e-07 57.8 72 41.7
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 5.5e-07 57.4 77 41.6
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 5.5e-07 57.4 72 40.3
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 7.2e-07 57.0 76 36.8
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 1.2e-06 56.2 74 43.2
FAN04G1340 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-06 56.2 72 40.3
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-06 56.2 72 40.3
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-06 56.2 72 40.3
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-06 56.2 72 40.3
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-06 56.2 77 39.0
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.6e-06 55.8 78 42.3
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.6e-06 55.8 76 39.5
Sc23g0006630 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.6e-06 55.8 75 40.0
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 2.7e-06 55.1 78 41.0
RcHm_v2.0_Chr6g0297451 Rosa chinensis HOM05D001817 ORTHO05D001647 2.7e-06 55.1 72 43.1
AUR62012432 Chenopodium quinoa HOM05D001817 ORTHO05D001647 3.6e-06 54.7 77 39.0
Medtr8g042530 Medicago truncatula HOM05D001817 ORTHO05D001647 3.6e-06 54.7 76 40.8
Sabra06G0201500 Salix brachista HOM05D001817 ORTHO05D001647 3.6e-06 54.7 76 39.5
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 4.7e-06 54.3 76 39.5
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.7e-06 54.3 72 40.3
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 4.7e-06 54.3 77 40.3
CDE05G3187 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 6.1e-06 53.9 76 35.5
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 6.1e-06 53.9 76 35.5
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 8.0e-06 53.5 73 38.4
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 8.0e-06 53.5 74 40.5


User provided reference genes

Program Settings