Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1627.1 888 100.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1499.2 888 86.1
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1466.1 891 88.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1456.8 913 83.1
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1447.6 891 82.8
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1414.1 892 85.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1393.6 893 83.8
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1357.8 927 79.6
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1342.4 907 80.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1331.2 985 72.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1308.5 906 81.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1305.4 906 81.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1258.8 889 73.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 888 72.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1242.3 896 71.4
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 887 71.9
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 902 71.2
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1236.5 893 74.2
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 894 74.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1233.8 893 71.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1232.2 884 71.6
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1232.2 877 71.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 916 71.2
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 890 71.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 903 70.9
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 877 71.0
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 905 69.7
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1218.4 890 72.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 864 71.8
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 960 67.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1215.3 890 71.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 890 70.9
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 903 69.8
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 900 69.8
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 920 69.3
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 891 70.0
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 904 70.0
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1207.2 904 69.5
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1207.2 894 70.1
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1207.2 930 68.2
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1204.5 885 70.1
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 866 71.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1199.1 927 67.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 888 73.6
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 934 67.8
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 890 69.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1192.9 885 69.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 885 69.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 898 69.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 912 72.8
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 920 66.8
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 880 68.6
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 901 68.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 900 68.2
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 887 68.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1169.1 881 69.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 880 68.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 892 69.3
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 900 67.9
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 901 65.4
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 906 68.8
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 901 66.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 901 67.5
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 899 67.4
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 903 67.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 899 70.3
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 894 67.9
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 916 68.7
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1155.2 894 67.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 934 66.4
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 904 67.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1152.1 887 67.4
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 874 74.6
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 865 69.4
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 841 70.2
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 934 66.5
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 891 67.8
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1148.3 949 65.6
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1148.3 949 65.6
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 895 68.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 949 65.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1146.3 891 69.1
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 880 67.5
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 903 67.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1141.7 910 66.7
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 887 67.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 867 67.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1135.6 908 67.6
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1135.2 941 66.0
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1133.2 906 66.0
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1132.5 926 65.4
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 928 67.9
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1127.9 842 69.1
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 931 64.6
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 884 67.2
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1115.5 906 65.7
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 886 66.0
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1095.5 845 67.9
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1090.5 996 60.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1087.8 899 64.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1075.8 979 61.0
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 6.1e-312 1074.3 883 63.8
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 6.1e-312 1073.5 877 63.9
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 2.1e-310 1068.9 852 66.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 1.1e-308 1063.1 912 61.6
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 9.9e-305 1050.0 778 67.7
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 6.4e-304 1047.3 887 63.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.1e-303 1043.9 829 68.9
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 9.3e-303 1043.5 873 63.5
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.1e-298 1028.5 862 60.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.6e-286 989.6 889 60.0
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 7.2e-279 964.1 896 60.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.3e-277 959.9 732 66.3
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.1e-263 913.7 900 61.0
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.5e-263 912.5 766 65.7
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.7e-262 909.1 743 63.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 6.7e-261 904.4 572 76.6
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 8.8e-261 904.0 737 65.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.3e-259 900.2 911 52.3
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.4e-258 896.7 986 55.9
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.2e-254 883.6 909 53.9
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.9e-248 862.4 503 81.1
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.7e-243 845.5 867 53.4
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.3e-227 791.2 686 61.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.1e-207 727.6 372 93.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 9.0e-181 638.3 661 54.2
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 8.4e-171 605.1 561 61.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-161 574.3 382 71.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.7e-158 563.1 350 76.9
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.5e-155 552.0 339 75.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.0e-152 543.5 359 71.9
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-150 538.1 537 58.7
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.8e-149 534.3 446 63.7
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 4.2e-138 496.5 704 43.3
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 4.8e-134 483.0 885 35.7
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.5e-127 461.5 987 36.1
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 6.3e-118 429.5 298 70.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.3e-107 395.2 520 48.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 7.3e-106 389.4 297 66.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.0e-105 386.0 461 53.6
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.3e-98 364.0 1009 33.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.9e-90 338.2 639 38.0
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.0e-83 315.8 378 54.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 7.1e-77 293.1 166 83.7
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.6e-49 202.2 328 40.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 7.9e-44 183.3 102 84.3
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.8e-43 182.2 151 72.8
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.9e-37 162.2 105 75.2
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 4.4e-34 151.0 107 66.4
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 7.7e-31 140.2 88 72.7
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 7.2e-21 107.1 77 67.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 9.4e-21 106.7 61 80.3
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.0e-19 101.3 86 60.5
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.7e-15 88.6 72 72.2
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.7e-14 85.9 57 70.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-14 85.1 45 84.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.2e-13 81.6 94 48.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 8.0e-12 77.0 94 47.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.0e-11 76.6 53 73.6
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 5.7e-10 70.9 58 58.6
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 7.5e-10 70.5 40 72.5
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.7e-09 68.2 69 47.8
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 9.1e-08 63.5 52 59.6
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.0e-06 60.1 47 61.7


User provided reference genes

Program Settings