Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1824g0040 Pisum sativum HOM05D001558 ORTHO05D021140 5.7e-95 350.9 176 100.0
Rhsim03G0070000 Rhododendron simsii HOM05D001558 ORTHO05D005808 1.2e-47 193.7 180 58.3
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 3.3e-42 175.6 139 66.9
Psat0ss5705g0120 Pisum sativum HOM05D001558 ORTHO05D021140 4.9e-38 161.8 174 51.7
vmacro07436 Vaccinium macrocarpon HOM05D001558 ORTHO05D005808 1.1e-37 160.6 174 54.0
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 1.6e-33 146.7 80 88.8
CSS0019098 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 3.4e-31 139.0 185 44.3
FAN14G2159 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.1e-29 134.0 139 52.5
Nitab4.5_0000573g0160 Nicotiana tabacum HOM05D001558 ORTHO05D005808 3.3e-26 122.5 178 43.8
BraA05t22574Z Brassica rapa HOM05D001558 ORTHO05D005808 7.3e-26 121.3 223 36.3
Haze_19651 Corylus avellana HOM05D001558 ORTHO05D005808 2.8e-25 119.4 178 42.7
Peaxi162Scf00069g00320 Petunia axillaris HOM05D001558 ORTHO05D005808 4.0e-24 115.5 193 40.4
SGA_v2.0_scaffold31G12893 Striga asiatica HOM05D001558 ORTHO05D005808 4.0e-24 115.5 141 48.2
Cc06_g06160 Coffea canephora HOM05D001558 ORTHO05D005808 5.2e-24 115.2 186 40.3
Oeu007200.1 Olea europaea HOM05D001558 ORTHO05D005808 2.0e-23 113.2 183 39.3
Sabra06G0160700 Salix brachista HOM05D001558 ORTHO05D005808 3.4e-23 112.5 218 36.2
Dinv21169 Davidia involucrata HOM05D001558 ORTHO05D005808 5.8e-23 111.7 196 39.3
TAR623G1089 Trochodendron aralioides HOM05D001558 ORTHO05D005808 7.6e-23 111.3 163 42.9
HanXRQChr06g0176131 Helianthus annuus HOM05D001558 ORTHO05D005808 1.9e-21 106.7 183 38.3
HanXRQChr05g0133061 Helianthus annuus HOM05D001558 ORTHO05D005808 1.2e-20 104.0 183 37.2
SMO334G0063 Selaginella moellendorffii HOM05D001558 ORTHO05D005808 1.2e-20 104.0 183 37.7
PGR142G1086 Punica granatum HOM05D001558 ORTHO05D005808 1.6e-20 103.6 181 37.6
MD12G1030800 Malus domestica HOM05D001558 ORTHO05D005808 1.7e-19 100.1 181 35.9
MD14G1031300 Malus domestica HOM05D001558 ORTHO05D005808 3.9e-19 99.0 183 35.0
Os08g0559300 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D005808 3.9e-19 99.0 181 35.4
FAN02G4309 Fragaria x ananassa HOM05D001558 ORTHO05D005808 8.7e-19 97.8 143 43.4
Psat6g080760 Pisum sativum HOM05D001558 ORTHO05D005808 8.7e-19 97.8 183 37.2
Ca_24224_v3 Cicer arietinum L. HOM05D001558 ORTHO05D005808 1.9e-18 96.7 183 36.6
Lj5g0025907 Lotus japonicus HOM05D001558 ORTHO05D005808 1.9e-18 96.7 183 36.6
Phvul.007G153100 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 1.9e-18 96.7 183 36.6
TPR.G14787 Trifolium pratense HOM05D001558 ORTHO05D005808 1.9e-18 96.7 183 36.6
EL10Ac7g16875 Beta vulgaris HOM05D001558 ORTHO05D005808 3.3e-18 95.9 183 35.5
CiPaw.09G017100 Carya illinoinensis HOM05D001558 ORTHO05D005808 3.3e-18 95.9 50 88.0
ATR0820G233 Amborella trichopoda HOM05D001558 ORTHO05D005808 5.6e-18 95.1 49 89.8
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea HOM05D001558 ORTHO05D005808 5.6e-18 95.1 48 91.7
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea HOM05D001558 ORTHO05D005808 5.6e-18 95.1 48 91.7
Glyma.10G075300 Glycine max HOM05D001558 ORTHO05D005808 5.6e-18 95.1 183 36.6
Medtr1g059610 Medicago truncatula HOM05D001558 ORTHO05D005808 5.6e-18 95.1 48 91.7
Actinidia05402 Actinidia chinensis HOM05D001558 ORTHO05D005808 9.6e-18 94.4 183 35.5
Phvul.001G192300 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 9.6e-18 94.4 50 88.0
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 9.6e-18 94.4 50 88.0
Atru.chr8.1448 Acer truncatum HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
Actinidia04015 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
CAN.G397.87 Capsicum annuum HOM05D001558 ORTHO05D005808 1.3e-17 94.0 188 36.7
Ciclev10011021m.g Citrus clementina HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
COL.COLO4_29672 Corchorus olitorius HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
Eucgr.K02568 Eucalyptus grandis HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
SGA_v2.0_scaffold13G06695 Striga asiatica HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
Thecc.05G095300 Theobroma cacao HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
TWI77G0440 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 1.3e-17 94.0 49 87.8
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 1.3e-17 94.0 51 84.3
CSS0036487 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 1.6e-17 93.6 183 35.0
Duzib093G1606 Durio zibethinus HOM05D001558 ORTHO05D005808 1.6e-17 93.6 48 89.6
FAN09G3352 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.6e-17 93.6 143 42.7
Lalb_Chr20g0111601 Lupinus albus HOM05D001558 ORTHO05D005808 1.6e-17 93.6 48 89.6
Lalb_Chr25g0288211 Lupinus albus HOM05D001558 ORTHO05D005808 1.6e-17 93.6 48 89.6
Sp3g09780 Schrenkiella parvula HOM05D001558 ORTHO05D005808 1.6e-17 93.6 183 34.4
Cpa.g.sc104.95 Carica papaya HOM05D001558 ORTHO05D005808 2.1e-17 93.2 50 86.0
THA.LOC104809967 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 2.1e-17 93.2 49 83.7
THA.LOC104816601 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 2.1e-17 93.2 49 83.7
Carub.0003s1086 Capsella rubella HOM05D001558 ORTHO05D005808 2.8e-17 92.8 50 84.0
Lj3A1009T56 Lonicera japonica HOM05D001558 ORTHO05D005808 2.8e-17 92.8 49 83.7
Nn6g34815 Nelumbo nucifera HOM05D001558 ORTHO05D005808 2.8e-17 92.8 48 87.5
Potri.006G208900 Populus trichocarpa HOM05D001558 ORTHO05D005808 2.8e-17 92.8 49 85.7
CSS0014933 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D021140 3.6e-17 92.4 132 43.2
CiPaw.10G012400 Carya illinoinensis HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
DCAR_012896 Daucus carota HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
Gohir.A01G204700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
Gohir.D01G194100 Gossypium hirsutum HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
Gorai.002G238200 Gossypium raimondii HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
PSO384G0942 Papaver somniferum HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 85.4
TWI74G0547 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 3.6e-17 92.4 49 85.7
GSVIVG01033891001 Vitis vinifera HOM05D001558 ORTHO05D005808 3.6e-17 92.4 48 87.5
Mapoly0020s0107 Marchantia polymorpha HOM05D001558 ORTHO05D005808 4.8e-17 92.0 50 84.0
Aa31LG3G4940 Aethionema arabicum HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BcaB04g18647 Brassica carinata HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BcaB06g25610 Brassica carinata HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BcaC01g04107 Brassica carinata HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BcaC05g29357 Brassica carinata HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
A03p37150 Brassica napus HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
A05p37790 Brassica napus HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
C03p45000 Brassica napus HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
C05p56410 Brassica napus HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BolC3t16760H Brassica oleracea HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BolC5t34308H Brassica oleracea HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
BraA03t12875Z Brassica rapa HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
CARHR086090 Cardamine hirsuta HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
Migut.J01002 Erythranthe guttata HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 85.7
Thhalv10020017m.g Eutrema salsugineum HOM05D001558 ORTHO05D005808 6.2e-17 91.7 49 83.7
AL3G23090 Arabidopsis lyrata HOM05D001558 ORTHO05D005808 8.1e-17 91.3 49 83.7
AT3G11540 Arabidopsis thaliana HOM05D001558 ORTHO05D005808 8.1e-17 91.3 49 83.7
PSO339G4154 Papaver somniferum HOM05D001558 ORTHO05D005808 8.1e-17 91.3 47 85.1
Zm00001eb039370 Zea mays HOM05D001558 ORTHO05D005808 8.1e-17 91.3 49 83.7
MSTRG.19276 Avicennia marina HOM05D001558 ORTHO05D005808 1.1e-16 90.9 49 83.7
Glyma.02G201300 Glycine max HOM05D001558 ORTHO05D005808 1.1e-16 90.9 183 35.0
Potri.016G075700 Populus trichocarpa HOM05D001558 ORTHO05D005808 1.4e-16 90.5 49 83.7
Prupe.7G101600 Prunus persica HOM05D001558 ORTHO05D005808 2.4e-16 89.7 47 83.0
SEGI_01931 Sequoiadendron giganteum HOM05D001558 ORTHO05D005808 3.1e-16 89.4 50 82.0
Aqoxy4G02724 Aquilegia oxysepala HOM05D001558 ORTHO05D005808 5.3e-16 88.6 48 83.3
Duzib106G1253 Durio zibethinus HOM05D001558 ORTHO05D005808 6.9e-16 88.2 49 81.6
SHI12376 Sapria himalayana HOM05D001558 ORTHO05D005808 6.9e-16 88.2 49 83.7
TAR369G0994 Trochodendron aralioides HOM05D001558 ORTHO05D005808 9.0e-16 87.8 51 84.3
TPR.G8632 Trifolium pratense HOM05D001558 ORTHO05D021140 1.2e-15 87.4 52 80.8
Lj3A1009G52 Lonicera japonica HOM05D001558 ORTHO05D005808 1.5e-15 87.0 76 57.9
DCAR_008674 Daucus carota HOM05D001558 ORTHO05D005808 2.0e-15 86.7 46 84.8
FAN05G0475 Fragaria x ananassa HOM05D001558 ORTHO05D005808 5.8e-15 85.1 163 36.2
FAN05G1606 Fragaria x ananassa HOM05D001558 ORTHO05D005808 5.8e-15 85.1 163 36.2
Pp3c2_30810 Physcomitrium patens HOM05D001558 ORTHO05D005808 1.3e-14 84.0 48 79.2
CANSAT64G1174 Cannabis sativa HOM05D001558 ORTHO05D005808 3.8e-14 82.4 45 80.0
Sabra16G0078200 Salix brachista HOM05D001558 ORTHO05D005808 3.8e-14 82.4 222 30.6
MBI05_g03435_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 7.1e-13 78.2 195 31.8
unitig_744.g24703 Utricularia gibba HOM05D001558 ORTHO05D005808 1.2e-12 77.4 143 37.1
CBR_g30524 Chara braunii HOM05D001558 ORTHO05D000048 2.1e-12 76.6 110 44.5
CDE11G0510 Ceratophyllum demersum HOM05D001558 ORTHO05D005808 3.5e-12 75.9 48 68.8
AUR62036988 Chenopodium quinoa HOM05D001558 ORTHO05D005808 1.3e-11 73.9 46 73.9
Manes.09G052300 Manihot esculenta HOM05D001558 ORTHO05D005808 2.3e-11 73.2 48 72.9
Actinidia27758 Actinidia chinensis HOM05D001558 ORTHO05D021140 3.9e-11 72.4 135 36.3
Oeu047838.2 Olea europaea HOM05D001558 ORTHO05D005808 1.1e-10 70.9 178 31.5
ECA236G3012 Erigeron canadensis HOM05D001558 ORTHO05D005808 5.6e-10 68.6 183 29.5
Glyma.03G198100 Glycine max HOM05D001558 ORTHO05D005808 1.3e-09 67.4 50 66.0
Glyma.19G196000 Glycine max HOM05D001558 ORTHO05D005808 1.3e-09 67.4 50 66.0
Sed0010659 Sechium edule HOM05D001558 ORTHO05D005808 1.3e-09 67.4 183 30.6
MELO3C024563.2 Cucumis melo HOM05D001558 ORTHO05D005808 1.1e-08 64.3 49 65.3
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 1.4e-08 63.9 40 82.5
Solyc09g010180.3 Solanum lycopersicum HOM05D001558 ORTHO05D005808 1.4e-08 63.9 49 65.3
Sopen09g004920 Solanum pennellii HOM05D001558 ORTHO05D005808 1.4e-08 63.9 49 65.3
PGSC0003DMG400008939 Solanum tuberosum HOM05D001558 ORTHO05D005808 1.4e-08 63.9 49 65.3
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 1.8e-08 63.5 109 38.5
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 1.8e-08 63.5 109 38.5
CsaV3_6G040850 Cucumis sativus L. HOM05D001558 ORTHO05D005808 1.8e-08 63.5 50 64.0
Lsat_1_v5_gn_8_74960 Lactuca sativa HOM05D001558 ORTHO05D005808 3.1e-08 62.8 49 63.3
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 9.0e-08 61.2 107 40.2
vmacro16017 Vaccinium macrocarpon HOM05D001558 ORTHO05D426453 9.0e-08 61.2 38 71.1
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 1.5e-07 60.5 40 77.5
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 2.0e-07 60.1 40 77.5
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis HOM05D001558 ORTHO05D005808 2.6e-07 59.7 35 77.1
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 2.6e-07 59.7 40 75.0
Ah.02g111800 Amaranthus hybridus HOM05D001558 ORTHO05D005808 3.4e-07 59.3 47 57.4
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 3.4e-07 59.3 72 50.0
Gohir.A11G318700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 7.6e-07 58.2 30 83.3
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 9.9e-07 57.8 40 72.5
Gohir.D11G337900 Gossypium hirsutum HOM05D001558 ORTHO05D005808 9.9e-07 57.8 30 83.3
Gorai.007G367900 Gossypium raimondii HOM05D001558 ORTHO05D005808 9.9e-07 57.8 30 83.3
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 9.9e-07 57.8 40 72.5
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.7e-06 57.0 40 75.0
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 2.2e-06 56.6 40 72.5
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.9e-06 56.2 27 88.9
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 4.9e-06 55.5 90 42.2
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 4.9e-06 55.5 40 70.0
AUR62022339 Chenopodium quinoa HOM05D004450 ORTHO05D005491 6.4e-06 55.1 167 29.9
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 6.4e-06 55.1 90 42.2
CsaV3_5G023850 Cucumis sativus L. HOM05D004450 ORTHO05D005491 6.4e-06 55.1 90 42.2
Actinidia03913 Actinidia chinensis HOM05D001558 ORTHO05D030947 8.4e-06 54.7 81 34.6
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 8.4e-06 54.7 37 75.7
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 8.4e-06 54.7 37 75.7
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 8.4e-06 54.7 37 75.7
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 8.4e-06 54.7 37 75.7
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 8.4e-06 54.7 90 41.1
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 8.4e-06 54.7 90 41.1


User provided reference genes

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