Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 5.2e-196 687.6 360 100.0
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.1e-160 569.3 363 82.9
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.2e-144 516.9 363 78.0
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.0e-143 513.8 362 76.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.4e-143 513.5 361 77.6
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.4e-140 503.4 363 76.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 4.1e-140 501.9 358 76.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.1e-137 493.8 365 74.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 9.4e-137 490.7 359 74.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 6.7e-135 484.6 360 74.4
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 5.3e-132 474.9 383 70.5
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.5e-129 466.1 360 68.1
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 9.4e-129 464.2 357 68.1
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 6.1e-128 461.5 360 67.2
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 4.8e-125 451.8 357 66.7
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.1e-124 448.7 360 67.5
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-123 446.8 360 67.8
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-123 446.8 360 67.8
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.5e-123 445.3 361 65.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-122 443.7 361 65.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 3.8e-122 442.2 357 66.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.2e-120 437.2 359 63.0
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.2e-120 437.2 354 66.7
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.1e-120 436.4 360 65.6
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.6e-120 435.6 360 66.7
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 6.1e-120 434.9 360 65.8
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 8.0e-120 434.5 360 64.2
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.0e-119 434.1 378 62.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.0e-119 434.1 356 64.3
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 3.0e-119 432.6 354 66.4
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 5.2e-119 431.8 362 64.9
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 8.8e-119 431.0 358 64.2
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.5e-118 430.3 354 64.7
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.0e-118 429.9 358 65.1
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 4.4e-118 428.7 360 63.6
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 4.9e-117 425.2 377 61.3
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 6.3e-117 424.9 379 61.2
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 8.3e-117 424.5 359 65.5
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 8.3e-117 424.5 351 64.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.4e-116 423.7 378 61.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.8e-116 423.3 353 65.2
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.4e-116 422.9 358 66.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.6e-115 420.2 361 63.2
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.6e-115 420.2 362 63.3
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.0e-115 419.9 365 62.2
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.9e-115 418.3 359 63.2
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 7.7e-115 417.9 378 64.0
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.7e-114 416.8 357 63.6
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.3e-114 416.4 361 62.0
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 8.6e-114 414.5 356 63.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.5e-113 413.7 362 62.4
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.5e-113 413.7 356 63.8
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.9e-113 413.3 366 62.8
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.3e-113 412.5 354 64.7
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.2e-113 412.1 362 62.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 9.5e-113 411.0 361 61.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.6e-112 410.2 360 61.4
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.8e-112 409.5 354 64.1
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.0e-111 407.5 357 63.9
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-111 407.1 359 60.4
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.8e-111 406.8 361 60.9
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 3.0e-111 406.0 356 61.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.0e-111 405.6 362 61.9
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 5.2e-111 405.2 353 62.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.0e-110 403.3 360 63.3
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.7e-109 400.2 366 60.4
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.9e-109 399.4 352 62.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 3.7e-109 399.1 358 62.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 9.2e-108 394.4 392 57.9
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 7.8e-107 391.3 423 53.7
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.0e-106 391.0 361 59.6
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 2.9e-106 389.4 376 57.4
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.1e-105 387.5 376 57.2
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 5.6e-105 385.2 362 59.1
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 8.0e-104 381.3 358 58.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.6e-102 376.3 356 57.9
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 5.8e-102 375.2 356 58.4
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.7e-101 373.6 345 62.0
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 3.7e-101 372.5 360 60.0
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.1e-100 369.0 359 59.6
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.2e-99 367.5 361 56.5
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 8.6e-98 361.3 362 58.3
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.5e-97 360.5 363 56.2
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.5e-97 360.5 372 56.7
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 5.6e-97 358.6 379 54.1
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 7.3e-97 358.2 358 58.1
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.6e-96 357.1 364 57.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 8.1e-96 354.8 371 56.1
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 3.1e-95 352.8 362 58.6
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 5.2e-95 352.1 380 55.8
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 9.8e-94 347.8 339 55.5
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 3.2e-92 342.8 425 51.1
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.2e-92 342.8 298 66.1
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.2e-92 342.8 343 58.0
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.2e-92 341.3 367 55.9
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-91 340.9 379 54.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 2.7e-91 339.7 378 53.4
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 2.7e-91 339.7 378 53.4
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 4.6e-91 339.0 376 54.0
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 4.6e-91 339.0 373 51.2
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 6.0e-91 338.6 386 51.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.9e-89 333.6 383 53.5
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.3e-89 331.6 378 53.2
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.1e-88 328.2 363 54.0
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.5e-86 323.9 365 53.2
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.2e-84 316.2 378 51.1
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.1e-84 315.8 376 51.6
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 9.6e-81 304.7 378 51.3
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 9.6e-81 304.7 378 51.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 9.6e-81 304.7 356 50.8
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.8e-80 303.1 375 52.0
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-79 299.7 375 51.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.0e-79 299.3 359 49.9
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.5e-78 297.4 383 50.1
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.6e-75 285.8 189 79.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.5e-70 270.8 336 49.7
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.9e-69 266.5 387 42.9
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 5.1e-66 255.8 241 61.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.3e-65 252.7 229 62.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.8e-63 247.3 353 45.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 9.0e-63 245.0 435 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.3e-58 230.3 334 41.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.0e-45 188.3 284 43.3
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 6.5e-45 185.7 356 36.5
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 3.5e-43 179.9 211 49.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 2.1e-35 154.1 116 65.5
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.4e-34 151.4 121 63.6
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.8e-32 143.7 155 58.1
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.5e-20 104.8 399 26.6
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.2e-20 103.6 417 25.4
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.0e-18 98.6 113 48.7
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-15 87.4 67 62.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 3.1e-15 87.0 56 78.6
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.0e-15 85.9 117 45.3
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 8.5e-13 79.0 56 73.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-12 77.8 64 65.6
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-12 77.8 61 67.2
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-12 76.6 61 67.2
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.2e-11 75.1 258 29.1
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.0e-11 72.4 60 65.0
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.0e-10 70.5 47 68.1


User provided reference genes

Program Settings