Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1239g0080 Pisum sativum HOM05D002656 ORTHO05D003062 3.7e-47 191.0 87 100.0
Psat0s301g0200 Pisum sativum HOM05D002656 ORTHO05D003446 1.3e-36 156.0 85 83.5
Psat6g145440 Pisum sativum HOM05D002656 ORTHO05D000895 1.3e-36 156.0 85 85.9
Psat7g021360 Pisum sativum HOM05D002656 ORTHO05D003062 1.7e-36 155.6 85 83.5
Psat7g021240 Pisum sativum HOM05D002656 ORTHO05D000895 4.3e-35 151.0 85 82.4
Psat0s636g0080 Pisum sativum HOM05D002656 ORTHO05D003062 1.2e-34 149.4 85 81.2
Psat0s2266g0080 Pisum sativum HOM05D002656 ORTHO05D003062 2.5e-27 125.2 84 70.2
Ca_20576_v3 Cicer arietinum L. HOM05D002656 ORTHO05D003062 8.1e-26 120.2 85 60.0
Lalb_Chr01g0003311 Lupinus albus HOM05D002656 ORTHO05D003062 1.2e-24 116.3 85 60.0
Phvul.011G057800 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.7e-23 112.5 83 59.0
Lj3g0026413 Lotus japonicus HOM05D002656 ORTHO05D003062 4.9e-23 110.9 85 56.5
Lalb_Chr19g0138181 Lupinus albus HOM05D002656 ORTHO05D003062 4.9e-23 110.9 86 58.1
Lalb_Chr03g0026271 Lupinus albus HOM05D002656 ORTHO05D003062 6.4e-23 110.5 85 56.5
Glyma.11G131600 Glycine max HOM05D002656 ORTHO05D003062 5.4e-22 107.5 83 57.8
Phvul.011G057700 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.6e-21 105.9 85 55.3
Glyma.12G055900 Glycine max HOM05D002656 ORTHO05D003062 4.6e-21 104.4 85 54.1
Medtr4g065200 Medicago truncatula HOM05D002656 ORTHO05D003062 4.6e-21 104.4 83 53.0
Glyma.11G131700 Glycine max HOM05D002656 ORTHO05D003062 6.0e-21 104.0 85 52.9
Medtr4g065150 Medicago truncatula HOM05D002656 ORTHO05D003062 6.0e-21 104.0 77 59.7
arahy.Tifrunner.gnm1.ann1.3A78DL Arachis hypogaea HOM05D002656 ORTHO05D003062 7.8e-21 103.6 70 62.9
arahy.Tifrunner.gnm1.ann1.S1942W Arachis hypogaea HOM05D002656 ORTHO05D003062 7.8e-21 103.6 70 62.9
TPR.G13668 Trifolium pratense HOM05D002656 ORTHO05D003062 3.0e-20 101.7 86 55.8
Psat0s493g0040 Pisum sativum HOM05D002656 ORTHO05D003062 6.6e-20 100.5 53 83.0
Psat4g061440 Pisum sativum HOM05D002656 ORTHO05D003062 6.6e-20 100.5 53 83.0
VMungo1127G0976 Vigna mungo HOM05D002656 ORTHO05D003062 2.5e-19 98.6 83 54.2
Psat4g061400 Pisum sativum HOM05D002656 ORTHO05D003062 3.3e-19 98.2 52 82.7
Cfa009727 Carpinus fangiana HOM05D002656 ORTHO05D003062 9.5e-19 96.7 82 52.4
Actinidia16305 Actinidia chinensis HOM05D002656 ORTHO05D003062 2.1e-18 95.5 84 52.4
VMungo1127G1189 Vigna mungo HOM05D002656 ORTHO05D003062 2.1e-18 95.5 84 51.2
Potri.001G018200 Populus trichocarpa HOM05D002656 ORTHO05D003062 3.6e-18 94.7 85 48.2
Lj2A649T45 Lonicera japonica HOM05D002656 ORTHO05D003062 4.7e-18 94.4 86 51.2
Sabra01G0012800 Salix brachista HOM05D002656 ORTHO05D003062 4.7e-18 94.4 85 48.2
CANSAT54G0447 Cannabis sativa HOM05D002656 ORTHO05D003062 6.2e-18 94.0 82 53.7
Rhsim13G0224400 Rhododendron simsii HOM05D002656 ORTHO05D003062 6.2e-18 94.0 81 50.6
Peaxi162Scf00075g00214 Petunia axillaris HOM05D002656 ORTHO05D003062 8.1e-18 93.6 66 59.1
CSS0020949 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.1e-17 93.2 81 50.6
CSS0048841 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.1e-17 93.2 81 50.6
MD11G1028500 Malus domestica HOM05D002656 ORTHO05D003062 1.1e-17 93.2 84 54.8
Peaxi162Scf00062g00113 Petunia axillaris HOM05D002656 ORTHO05D003062 1.4e-17 92.8 73 57.5
CANSAT54G0212 Cannabis sativa HOM05D002656 ORTHO05D003062 1.8e-17 92.4 84 51.2
Haze_23080 Corylus avellana HOM05D002656 ORTHO05D003062 1.8e-17 92.4 82 51.2
Potri.003G206000 Populus trichocarpa HOM05D002656 ORTHO05D003062 1.8e-17 92.4 85 48.2
SalBow4G0144 Salvia bowleyana HOM05D002656 ORTHO05D003062 1.8e-17 92.4 83 49.4
Atru.chr3.2573 Acer truncatum HOM05D002656 ORTHO05D003062 2.4e-17 92.0 81 50.6
Nitab4.5_0001925g0060 Nicotiana tabacum HOM05D002656 ORTHO05D003062 2.4e-17 92.0 76 55.3
MSTRG.21401 Avicennia marina HOM05D002656 ORTHO05D003062 3.1e-17 91.7 79 53.2
Cpa.g.sc84.84 Carica papaya HOM05D002656 ORTHO05D003062 4.0e-17 91.3 82 50.0
PSO384G2031 Papaver somniferum HOM05D002656 ORTHO05D003062 5.2e-17 90.9 70 55.7
Ciclev10014240m.g Citrus clementina HOM05D002656 ORTHO05D003062 6.8e-17 90.5 81 54.3
CsaV3_4G024090 Cucumis sativus L. HOM05D002656 ORTHO05D003062 6.8e-17 90.5 85 49.4
Duzib150G0815 Durio zibethinus HOM05D002656 ORTHO05D003062 6.8e-17 90.5 77 51.9
MELO3C014613.2 Cucumis melo HOM05D002656 ORTHO05D003062 8.9e-17 90.1 85 49.4
QL01p005559 Quercus lobata HOM05D002656 ORTHO05D003062 8.9e-17 90.1 84 50.0
Rhsim01G0190200 Rhododendron simsii HOM05D002656 ORTHO05D003062 8.9e-17 90.1 81 49.4
vmacro04181 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 8.9e-17 90.1 84 47.6
Dinv08041 Davidia involucrata HOM05D002656 ORTHO05D003062 1.2e-16 89.7 86 50.0
Thecc.09G226900 Theobroma cacao HOM05D002656 ORTHO05D003062 1.5e-16 89.4 75 52.0
vmacro12714 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 1.5e-16 89.4 77 49.4
PGSC0003DMG400023854 Solanum tuberosum HOM05D002656 ORTHO05D003062 2.0e-16 89.0 76 53.9
TAR369G0937 Trochodendron aralioides HOM05D002656 ORTHO05D003062 2.0e-16 89.0 84 48.8
CAN.G575.56 Capsicum annuum HOM05D002656 ORTHO05D003062 2.6e-16 88.6 79 53.2
Solyc12g100120.2 Solanum lycopersicum HOM05D002656 ORTHO05D003062 2.6e-16 88.6 76 53.9
Sopen12g034750 Solanum pennellii HOM05D002656 ORTHO05D003062 2.6e-16 88.6 76 53.9
DCAR_029943 Daucus carota HOM05D002656 ORTHO05D003062 4.4e-16 87.8 74 51.4
Sabra03G0152200 Salix brachista HOM05D002656 ORTHO05D003062 4.4e-16 87.8 85 45.9
Oeu012936.1 Olea europaea HOM05D002656 ORTHO05D003062 7.6e-16 87.0 85 51.8
GSVIVG01025310001 Vitis vinifera HOM05D002656 ORTHO05D003062 7.6e-16 87.0 85 48.2
Sabra03G0152500 Salix brachista HOM05D002656 ORTHO05D003062 1.3e-15 86.3 85 44.7
Medtr4g065220 Medicago truncatula HOM05D002656 ORTHO05D003062 1.7e-15 85.9 87 48.3
ClCG02G023420 Citrullus lanatus HOM05D002656 ORTHO05D003062 2.2e-15 85.5 85 47.1
MD03G1023400 Malus domestica HOM05D002656 ORTHO05D003062 3.8e-15 84.7 84 50.0
Peaxi162Scf00839g00019 Petunia axillaris HOM05D002656 ORTHO05D003062 3.8e-15 84.7 84 50.0
CAN.G575.55 Capsicum annuum HOM05D002656 ORTHO05D003062 4.9e-15 84.3 76 51.3
Nitab4.5_0000175g0020 Nicotiana tabacum HOM05D002656 ORTHO05D003062 4.9e-15 84.3 85 49.4
EL10Ac4g10305 Beta vulgaris HOM05D002656 ORTHO05D003062 6.4e-15 84.0 85 47.1
Manes.06G167200 Manihot esculenta HOM05D002656 ORTHO05D003062 6.4e-15 84.0 84 46.4
FvH4_3g43250 Fragaria vesca HOM05D002656 ORTHO05D003062 1.1e-14 83.2 74 51.4
FAN11G2025 Fragaria x ananassa HOM05D002656 ORTHO05D003062 1.1e-14 83.2 74 51.4
FAN21G1376 Fragaria x ananassa HOM05D002656 ORTHO05D003062 1.1e-14 83.2 74 51.4
FAN25G2888 Fragaria x ananassa HOM05D002656 ORTHO05D003062 1.1e-14 83.2 74 51.4
Prupe.6G022600 Prunus persica HOM05D002656 ORTHO05D003062 1.1e-14 83.2 84 47.6
SGA_v2.0_scaffold8G04617 Striga asiatica HOM05D002656 ORTHO05D003062 1.4e-14 82.8 72 52.8
TAR633G1819 Trochodendron aralioides HOM05D002656 ORTHO05D003062 1.9e-14 82.4 69 52.2
Cpa.g.sc84.86 Carica papaya HOM05D002656 ORTHO05D003062 3.2e-14 81.6 82 46.3
Gohir.D07G129800 Gossypium hirsutum HOM05D002656 ORTHO05D003062 3.2e-14 81.6 85 48.2
Gorai.001G140300 Gossypium raimondii HOM05D002656 ORTHO05D003062 3.2e-14 81.6 85 48.2
Nn2g15392 Nelumbo nucifera HOM05D002656 ORTHO05D003062 3.2e-14 81.6 82 48.8
Sc09g0000530 Simmondsia chinensis HOM05D002656 ORTHO05D003062 3.2e-14 81.6 75 49.3
Dinv36288 Davidia involucrata HOM05D002656 ORTHO05D003062 4.2e-14 81.3 84 45.2
Nitab4.5_0002278g0030 Nicotiana tabacum HOM05D002656 ORTHO05D003062 4.2e-14 81.3 84 47.6
PGR102G1080 Punica granatum HOM05D002656 ORTHO05D003062 4.2e-14 81.3 84 46.4
FAN16G1961 Fragaria x ananassa HOM05D002656 ORTHO05D003062 5.4e-14 80.9 73 50.7
Gohir.A07G125600 Gossypium hirsutum HOM05D002656 ORTHO05D003062 5.4e-14 80.9 85 48.2
Eucgr.B03677 Eucalyptus grandis HOM05D002656 ORTHO05D003062 7.1e-14 80.5 68 51.5
Thhalv10012662m.g Eutrema salsugineum HOM05D002656 ORTHO05D003062 7.1e-14 80.5 85 45.9
TWI32G0772 Tripterygium wilfordii HOM05D002656 ORTHO05D003062 7.1e-14 80.5 82 46.3
Sed0002857 Sechium edule HOM05D002656 ORTHO05D003062 9.2e-14 80.1 85 47.1
Solyc11g061700.2 Solanum lycopersicum HOM05D002656 ORTHO05D003062 9.2e-14 80.1 85 49.4
Sopen11g023540 Solanum pennellii HOM05D002656 ORTHO05D003062 9.2e-14 80.1 76 50.0
PGSC0003DMG400015136 Solanum tuberosum HOM05D002656 ORTHO05D003062 9.2e-14 80.1 76 50.0
CSS0046914 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.2e-13 79.7 85 48.2
CSS0049476 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.2e-13 79.7 85 48.2
Phvul.L010743 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.2e-13 79.7 85 47.1
TWI60G1085 Tripterygium wilfordii HOM05D002656 ORTHO05D003062 1.2e-13 79.7 82 45.1
Aa31LG3G14680 Aethionema arabicum HOM05D002656 ORTHO05D003062 1.6e-13 79.3 87 48.3
THA.LOC104804973 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 1.6e-13 79.3 85 47.1
Carub.0006s1113 Capsella rubella HOM05D002656 ORTHO05D003062 2.1e-13 79.0 91 49.5
Glyma.15G033000 Glycine max HOM05D002656 ORTHO05D003062 2.1e-13 79.0 76 51.3
TPR.G13663 Trifolium pratense HOM05D002656 ORTHO05D003062 2.1e-13 79.0 91 48.4
RcHm_v2.0_Chr5g0077301 Rosa chinensis HOM05D002656 ORTHO05D003062 3.5e-13 78.2 85 47.1
Nn7g36189 Nelumbo nucifera HOM05D002656 ORTHO05D003062 6.0e-13 77.4 77 49.4
Sed0016959 Sechium edule HOM05D002656 ORTHO05D003062 6.0e-13 77.4 83 45.8
THA.LOC104799093 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 6.0e-13 77.4 84 45.2
Aqoxy1G00248 Aquilegia oxysepala HOM05D002656 ORTHO05D003062 7.8e-13 77.0 69 43.5
MBI01_g10238_MAGBIO Magnolia biondii HOM05D002656 ORTHO05D003062 1.3e-12 76.3 82 45.1
THA.LOC104811146 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 1.3e-12 76.3 87 43.7
AT5G12950 Arabidopsis thaliana HOM05D002656 ORTHO05D003062 1.7e-12 75.9 93 44.1
Sp6g31010 Schrenkiella parvula HOM05D002656 ORTHO05D003062 1.7e-12 75.9 85 42.4
A02p01610 Brassica napus HOM05D002656 ORTHO05D003062 2.3e-12 75.5 69 53.6
BraA02t05140Z Brassica rapa HOM05D002656 ORTHO05D003062 2.3e-12 75.5 69 53.6
CAN.G31.13 Capsicum annuum HOM05D002656 ORTHO05D003062 3.9e-12 74.7 73 46.6
C02p05820 Brassica napus HOM05D002656 ORTHO05D003062 5.1e-12 74.3 69 52.2
BolC2t06527H Brassica oleracea HOM05D002656 ORTHO05D003062 5.1e-12 74.3 69 52.2
A03p05730 Brassica napus HOM05D002656 ORTHO05D003062 8.7e-12 73.6 69 52.2
BolC3t13173H Brassica oleracea HOM05D002656 ORTHO05D003062 8.7e-12 73.6 69 52.2
BraA03t09911Z Brassica rapa HOM05D002656 ORTHO05D003062 8.7e-12 73.6 69 52.2
AL6G23540 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 1.1e-11 73.2 84 46.4
BcaB01g05388 Brassica carinata HOM05D002656 ORTHO05D003062 1.1e-11 73.2 69 52.2
C03p06680 Brassica napus HOM05D002656 ORTHO05D003062 1.1e-11 73.2 69 52.2
BcaNung01184 Brassica carinata HOM05D002656 ORTHO05D003062 1.9e-11 72.4 69 50.7
CARHR200500 Cardamine hirsuta HOM05D002656 ORTHO05D003062 2.5e-11 72.0 67 50.7
Lsat_1_v5_gn_1_66380 Lactuca sativa HOM05D002656 ORTHO05D003062 3.3e-11 71.6 82 41.5
VMungo1080G0304 Vigna mungo HOM05D002656 ORTHO05D003062 3.3e-11 71.6 81 44.4
EL10Ac5g12201 Beta vulgaris HOM05D002656 ORTHO05D003062 5.6e-11 70.9 75 45.3
Cc01_g04690 Coffea canephora HOM05D002656 ORTHO05D003062 5.6e-11 70.9 84 41.7
HanXRQChr10g0291081 Helianthus annuus HOM05D002656 ORTHO05D003062 7.3e-11 70.5 86 40.7
arahy.Tifrunner.gnm1.ann1.0VG9YA Arachis hypogaea HOM05D002656 ORTHO05D003062 2.1e-10 68.9 84 40.5
Oeu055806.1 Olea europaea HOM05D002656 ORTHO05D003062 2.8e-10 68.6 84 38.1
AL6G23554 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 4.8e-10 67.8 86 44.2
Ah.07g199980 Amaranthus hybridus HOM05D002656 ORTHO05D003062 6.2e-10 67.4 93 39.8
AL6G23050 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 6.2e-10 67.4 86 44.2
ECA238G1314 Erigeron canadensis HOM05D002656 ORTHO05D003062 6.2e-10 67.4 74 44.6
HanXRQChr07g0197321 Helianthus annuus HOM05D002656 ORTHO05D003062 6.2e-10 67.4 78 43.6
MSTRG.21402 Avicennia marina HOM05D002656 ORTHO05D003062 2.4e-09 65.5 71 38.0
TAR362G0359 Trochodendron aralioides HOM05D002656 ORTHO05D003062 3.1e-09 65.1 89 39.3
AT5G12960 Arabidopsis thaliana HOM05D002656 ORTHO05D003062 6.9e-09 63.9 86 43.0
Ah.04g161810 Amaranthus hybridus HOM05D002656 ORTHO05D003062 1.5e-08 62.8 71 43.7
vmacro04182 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 2.6e-08 62.0 84 36.9
arahy.Tifrunner.gnm1.ann1.TTFN2L Arachis hypogaea HOM05D002656 ORTHO05D003062 3.4e-08 61.6 82 40.2
Migut.D00571 Erythranthe guttata HOM05D002656 ORTHO05D003062 3.4e-08 61.6 72 43.1
ATR0605G155 Amborella trichopoda HOM05D002656 ORTHO05D003062 4.4e-08 61.2 59 47.5
AUR62019262 Chenopodium quinoa HOM05D002656 ORTHO05D003062 4.4e-08 61.2 94 36.2
ECA248G1000 Erigeron canadensis HOM05D002656 ORTHO05D003062 5.8e-08 60.8 56 48.2
AUR62000090 Chenopodium quinoa HOM05D002656 ORTHO05D003062 4.9e-07 57.8 94 36.2
RcHm_v2.0_Chr5g0077311 Rosa chinensis HOM05D002656 ORTHO05D003062 1.1e-06 56.6 82 40.2
Ciclev10014230m.g Citrus clementina HOM05D002656 ORTHO05D003062 1.9e-06 55.8 75 41.3
Lj1A360T39 Lonicera japonica HOM05D002656 ORTHO05D003062 7.1e-06 53.9 77 36.4


User provided reference genes

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