Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-86 322.8 155 100.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.5e-78 295.4 182 80.8
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.6e-77 292.7 182 79.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.1e-77 292.4 182 81.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 8.9e-76 287.0 181 78.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 3.4e-75 285.0 182 76.9
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 9.8e-75 283.5 181 77.3
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.9e-74 282.0 182 76.9
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 6.4e-74 280.8 181 76.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.4e-73 279.6 182 75.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.4e-73 278.9 181 76.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.4e-73 278.9 181 76.2
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 8.6e-71 270.4 181 73.5
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 4.3e-70 268.1 181 72.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.3e-70 267.3 181 71.3
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 9.5e-70 266.9 182 70.3
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 9.5e-70 266.9 182 70.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 9.5e-70 266.9 181 72.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.5e-70 266.9 181 72.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.1e-69 265.8 181 71.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-69 265.8 181 71.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 3.6e-69 265.0 181 71.3
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 8.0e-69 263.8 182 72.0
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.1e-68 263.5 181 70.7
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-68 262.7 181 70.7
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-68 262.7 181 70.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.3e-68 262.3 181 70.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 3.1e-68 261.9 180 71.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 6.8e-68 260.8 181 70.2
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 6.8e-68 260.8 181 70.2
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 6.8e-68 260.8 181 70.2
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 6.8e-68 260.8 182 71.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 8.9e-68 260.4 182 69.8
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 8.9e-68 260.4 181 69.6
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 8.9e-68 260.4 181 69.6
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.0e-67 259.2 181 71.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.0e-67 259.2 182 70.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 4.4e-67 258.1 181 69.6
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 5.8e-67 257.7 181 69.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.5e-67 257.3 182 69.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 7.5e-67 257.3 181 69.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 9.8e-67 256.9 181 69.6
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-66 256.5 181 69.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-66 256.5 181 69.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.3e-66 256.5 181 69.1
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.3e-66 256.5 181 69.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.3e-66 256.5 181 69.1
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.7e-66 256.1 179 67.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.7e-66 256.1 179 67.6
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.9e-66 255.4 181 69.1
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.7e-66 255.0 181 69.1
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 3.7e-66 255.0 181 68.5
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 3.7e-66 255.0 181 69.6
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.7e-66 255.0 181 69.6
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.9e-66 254.6 182 68.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.9e-66 254.6 182 68.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 4.9e-66 254.6 181 68.5
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 4.9e-66 254.6 181 68.5
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 6.4e-66 254.2 179 66.5
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 8.3e-66 253.8 181 68.5
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.1e-65 253.4 181 68.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.1e-65 253.4 181 66.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.4e-65 253.1 182 68.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.4e-65 252.3 183 68.9
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.4e-65 252.3 183 68.9
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.4e-65 252.3 181 69.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.2e-65 251.9 169 72.8
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.2e-65 251.9 181 68.5
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 5.4e-65 251.1 181 68.5
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.4e-65 251.1 182 66.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.2e-65 250.4 179 65.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 9.2e-65 250.4 179 65.9
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.2e-65 250.4 181 68.5
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.2e-64 250.0 181 68.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-64 250.0 181 66.9
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-64 250.0 181 66.9
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-64 250.0 181 66.9
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.6e-64 249.6 162 74.1
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-64 249.6 181 66.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.7e-64 248.8 172 70.3
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.5e-64 248.4 182 67.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 4.6e-64 248.1 177 68.9
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.8e-64 247.3 182 67.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.8e-64 247.3 182 67.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 7.8e-64 247.3 179 65.4
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.0e-63 245.4 182 65.9
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 5.1e-63 244.6 181 67.4
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.1e-63 244.6 181 67.4
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 6.6e-63 244.2 181 66.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.6e-63 244.2 174 69.5
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 6.6e-63 244.2 181 68.0
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 8.6e-63 243.8 181 67.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 8.6e-63 243.8 182 66.5
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.5e-62 242.3 181 66.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.5e-62 242.3 181 66.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.5e-62 242.3 181 66.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.5e-62 242.3 181 66.9
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.3e-62 241.9 181 66.3
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.3e-62 241.5 181 65.7
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.3e-62 241.5 181 66.3
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 5.6e-62 241.1 181 65.2
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 9.5e-62 240.4 181 64.1
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.1e-61 239.2 173 67.6
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 4.7e-61 238.0 182 64.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 6.2e-61 237.7 181 64.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 8.1e-61 237.3 182 64.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 4.0e-60 235.0 181 63.5
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 8.9e-60 233.8 181 63.0
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.2e-59 233.4 181 63.0
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-59 233.4 182 63.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.0e-59 232.6 181 63.0
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.4e-59 231.9 181 63.0
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.7e-58 229.6 181 61.3
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.7e-58 229.6 182 63.7
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.4e-57 226.5 183 60.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 4.1e-57 224.9 181 61.9
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 5.4e-57 224.6 181 61.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 9.2e-57 223.8 182 63.2
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.2e-57 223.8 181 61.9
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.6e-56 223.0 181 63.0
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.1e-56 222.6 173 61.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.7e-56 222.2 182 62.6
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 7.8e-56 220.7 181 60.2
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.3e-55 219.9 181 61.9
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.3e-55 219.2 182 62.1
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 3.9e-55 218.4 183 59.0
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.9e-55 218.4 182 62.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 9.5e-54 213.8 182 61.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.2e-53 211.1 154 70.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 8.1e-53 210.7 155 67.1
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.4e-51 205.3 154 68.8
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.8e-51 204.5 172 57.6
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 5.8e-51 204.5 180 56.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 5.8e-51 204.5 180 56.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.2e-49 198.4 98 94.9
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 9.2e-49 197.2 181 53.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 9.2e-49 197.2 172 56.4
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.6e-48 196.4 181 58.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.1e-48 196.1 181 55.8
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.0e-47 193.7 181 54.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 5.1e-47 191.4 182 52.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 6.6e-47 191.0 170 57.6
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.1e-46 190.3 181 53.0
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.1e-46 190.3 181 53.0
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.6e-46 187.2 146 65.1
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.6e-43 179.1 181 50.3
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.3e-42 176.8 181 49.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-42 176.0 154 60.4
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.1e-41 173.7 177 51.4
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 9.9e-35 150.6 159 53.5
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.5e-30 136.0 109 67.0
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.1e-28 129.0 122 56.6
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.3e-26 123.6 180 37.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.2e-26 122.9 58 96.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.9e-26 122.5 115 55.7
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.3e-23 112.8 91 57.1
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.8e-21 105.1 58 84.5
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 4.3e-14 82.0 47 78.7
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.7e-11 71.2 35 94.3
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.2e-08 63.9 92 44.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.5e-06 57.0 39 64.1


User provided reference genes

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