Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.1e-52 208.8 107 100.0
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 4.7e-44 181.0 95 94.7
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 5.6e-37 157.5 96 82.3
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.8e-36 155.2 96 82.3
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.3e-30 135.6 99 72.7
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 8.7e-30 133.7 94 73.4
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.5e-29 132.9 96 71.9
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.5e-29 132.9 96 71.9
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 5.6e-29 131.0 97 72.2
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 5.6e-29 131.0 96 69.8
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 9.6e-29 130.2 97 70.1
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.3e-28 129.8 97 71.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.6e-28 129.4 92 72.8
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.8e-27 125.9 97 69.1
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.8e-27 125.9 91 71.4
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.8e-27 125.9 97 68.0
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.4e-27 125.6 96 69.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.4e-27 125.6 97 69.1
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.1e-27 125.2 97 69.1
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.3e-27 124.4 97 68.0
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.3e-27 124.4 96 66.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.3e-27 124.4 96 66.7
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 6.9e-27 124.0 96 67.7
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 9.0e-27 123.6 89 71.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-26 122.9 94 68.1
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-26 122.9 94 68.1
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 2.0e-26 122.5 96 67.7
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.5e-26 121.3 96 67.7
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.6e-26 120.6 92 68.5
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 7.6e-26 120.6 92 68.5
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 9.9e-26 120.2 92 67.4
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 1.3e-25 119.8 96 64.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.2e-25 119.0 96 66.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 3.8e-25 118.2 96 62.5
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.8e-25 118.2 96 66.7
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.4e-25 117.5 94 63.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 6.4e-25 117.5 95 63.2
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.4e-25 117.5 95 67.4
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.4e-25 117.5 96 65.6
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 6.4e-25 117.5 97 63.9
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 6.4e-25 117.5 96 62.5
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 8.4e-25 117.1 96 64.6
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.1e-24 116.7 96 61.5
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.1e-24 116.7 96 65.6
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.4e-24 116.3 96 63.5
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.9e-24 115.9 95 65.3
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.9e-24 115.9 96 64.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.9e-24 115.9 92 67.4
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.4e-24 115.5 96 64.6
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.4e-24 115.5 93 65.6
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.2e-24 115.2 96 63.5
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.2e-24 114.8 92 65.2
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 7.1e-24 114.0 95 65.3
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 7.1e-24 114.0 96 62.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.2e-23 113.2 96 61.5
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.2e-23 113.2 96 60.4
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.6e-23 112.8 86 67.4
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.6e-23 112.8 98 65.3
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.6e-23 112.8 97 64.9
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.1e-23 112.5 92 67.4
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.7e-23 112.1 91 61.5
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.5e-23 111.7 97 61.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 3.5e-23 111.7 96 59.4
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.5e-23 111.7 86 66.3
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.5e-23 111.7 97 60.8
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.5e-23 111.7 97 62.9
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.6e-23 111.3 100 63.0
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.6e-23 111.3 100 62.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.0e-23 110.9 97 60.8
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.9e-23 110.5 100 62.0
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 7.9e-23 110.5 96 60.4
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.0e-22 110.2 89 62.9
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.3e-22 109.8 89 64.0
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.8e-22 109.4 100 62.0
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 2.3e-22 109.0 82 69.5
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 5.1e-22 107.8 97 60.8
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 5.1e-22 107.8 97 61.9
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.7e-22 107.5 97 61.9
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 8.7e-22 107.1 96 58.3
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 8.7e-22 107.1 99 59.6
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.5e-21 106.3 96 59.4
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.5e-21 106.3 95 60.0
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.5e-21 106.3 100 62.0
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.9e-21 105.9 100 63.0
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.9e-21 105.9 82 67.1
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.5e-21 105.5 96 57.3
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 3.3e-21 105.1 93 63.4
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 4.3e-21 104.8 96 60.4
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 4.3e-21 104.8 96 61.5
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.3e-21 104.8 96 58.3
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 7.4e-21 104.0 95 61.1
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 9.6e-21 103.6 96 58.3
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.6e-20 102.8 96 58.3
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 1.6e-20 102.8 83 62.7
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.6e-20 102.8 86 64.0
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.6e-20 102.8 96 56.2
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.6e-20 102.8 96 59.4
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-20 102.4 96 59.4
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.8e-20 102.1 90 61.1
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.8e-20 101.3 96 59.4
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 4.8e-20 101.3 93 62.4
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 4.8e-20 101.3 94 59.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 4.8e-20 101.3 94 59.6
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 6.2e-20 100.9 96 58.3
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 8.1e-20 100.5 94 59.6
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 8.1e-20 100.5 96 57.3
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 8.1e-20 100.5 106 56.6
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 8.1e-20 100.5 95 58.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-19 99.8 90 60.0
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.4e-19 99.8 90 60.0
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.8e-19 99.4 95 58.9
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.4e-19 99.0 96 59.4
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 2.4e-19 99.0 86 60.5
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.1e-19 98.6 96 57.3
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 5.3e-19 97.8 100 55.0
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 2.6e-18 95.5 96 57.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.3e-17 93.2 78 62.8
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 3.8e-17 91.7 96 54.2
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 8.4e-17 90.5 96 54.2
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.1e-16 90.1 91 56.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.1e-16 90.1 94 52.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.4e-16 89.7 102 54.9
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.2e-16 88.6 96 52.1
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.2e-15 86.7 87 55.2
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.5e-15 85.1 96 51.0
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.0e-14 83.6 102 50.0
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.0e-14 82.0 102 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.5e-13 79.7 74 59.5
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 9.6e-13 77.0 88 54.5
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.6e-12 76.3 90 47.8
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.8e-12 75.5 57 70.2
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 8.2e-12 73.9 85 48.2
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.8e-11 72.8 74 55.4
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 6.9e-11 70.9 96 51.0
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.0e-10 69.3 83 51.8
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.4e-10 68.6 83 49.4
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 4.9e-09 64.7 54 64.8
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 7.1e-08 60.8 59 52.5
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.3e-08 60.5 58 53.4
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.2e-07 60.1 59 50.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.6e-07 58.2 47 59.6
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 6.7e-06 54.3 59 47.5


User provided reference genes

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