Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.1e-133 479.9 238 100.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.6e-119 432.2 230 92.6
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 4.5e-119 431.4 230 92.2
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 5.1e-115 417.9 230 87.8
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.7e-115 417.2 238 85.3
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 5.7e-114 414.5 230 87.0
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.2e-113 412.5 230 86.5
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 8.2e-113 410.6 231 86.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.3e-112 407.9 231 87.0
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 5.3e-112 407.9 231 87.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.5e-111 406.4 231 85.3
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 7.6e-111 404.1 231 85.7
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.2e-110 402.5 230 85.2
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.9e-110 402.1 231 84.4
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 5.0e-110 401.4 230 84.3
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 6.5e-110 401.0 231 85.7
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-109 400.2 230 85.2
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.4e-109 399.8 233 83.7
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.9e-109 399.4 231 84.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 2.5e-109 399.1 231 84.4
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 2.5e-109 399.1 233 84.1
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 5.5e-109 397.9 231 84.4
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 7.2e-109 397.5 231 84.0
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.2e-109 397.5 231 84.0
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.2e-109 397.5 231 85.7
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 9.4e-109 397.1 231 84.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.2e-108 396.7 231 84.8
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.6e-108 396.4 231 85.3
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 2.7e-108 395.6 226 85.0
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.6e-108 395.2 224 85.7
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 3.6e-108 395.2 232 83.6
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.6e-108 395.2 231 84.4
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 7.9e-108 394.0 236 82.6
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.0e-107 393.7 233 82.4
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.0e-107 393.7 231 84.0
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 3.9e-107 391.7 225 84.4
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 3.9e-107 391.7 231 84.4
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 6.7e-107 391.0 234 82.1
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.5e-106 389.8 231 82.7
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 5.7e-106 387.9 231 81.8
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 7.4e-106 387.5 274 73.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 9.7e-106 387.1 231 83.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.3e-105 386.7 234 82.1
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 2.8e-105 385.6 231 82.3
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 4.8e-105 384.8 232 81.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 6.3e-105 384.4 234 81.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.1e-104 383.6 256 76.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.4e-104 383.3 240 79.2
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.4e-104 383.3 232 81.5
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.4e-104 383.3 234 80.8
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 3.1e-104 382.1 231 81.4
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 4.1e-104 381.7 228 83.8
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 5.3e-104 381.3 233 79.8
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 5.3e-104 381.3 232 81.5
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 9.1e-104 380.6 237 80.6
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.0e-103 379.4 232 79.7
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-103 379.0 240 77.9
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 4.5e-103 378.3 231 81.4
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.2e-102 375.9 232 79.7
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 6.5e-102 374.4 232 78.9
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.5e-102 374.0 231 80.5
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 8.5e-102 374.0 231 81.0
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.4e-101 373.2 232 80.6
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.9e-101 372.9 233 80.3
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 5.5e-101 371.3 232 79.7
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 9.4e-101 370.5 232 78.4
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 9.4e-101 370.5 232 78.4
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 9.4e-101 370.5 232 78.4
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 9.4e-101 370.5 232 78.4
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 9.4e-101 370.5 232 78.4
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.2e-100 370.2 234 78.6
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-100 370.2 234 78.6
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.2e-100 370.2 234 78.6
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.6e-100 369.8 226 77.9
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 6.1e-100 367.9 234 78.2
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.0e-99 367.1 236 76.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 2.3e-99 365.9 234 77.8
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.0e-99 365.5 224 80.4
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 8.8e-99 364.0 234 77.8
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 8.8e-99 364.0 238 74.8
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.5e-98 363.2 236 75.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.6e-98 362.5 231 77.5
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 7.4e-98 360.9 236 75.4
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-97 360.1 236 75.0
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.2e-97 359.4 236 75.0
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 2.2e-97 359.4 230 76.1
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.7e-97 358.6 231 77.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 6.3e-97 357.8 231 76.6
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 6.3e-97 357.8 231 76.6
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.1e-96 357.1 231 77.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 1.4e-96 356.7 226 76.1
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.0e-94 350.5 213 80.3
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.3e-94 350.1 216 81.0
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.3e-94 350.1 232 75.0
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.7e-94 349.7 231 75.3
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 2.2e-94 349.4 244 72.5
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 6.5e-94 347.8 216 80.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.1e-93 347.1 229 77.3
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.9e-93 346.3 221 76.5
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.9e-93 346.3 231 74.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 3.2e-93 345.5 231 74.5
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 5.5e-93 344.7 231 74.9
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.2e-92 343.6 232 73.7
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.7e-92 342.4 232 74.6
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 6.1e-92 341.3 233 73.8
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.4e-91 340.1 232 74.6
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 9.7e-90 334.0 228 73.2
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.4e-88 330.1 241 72.6
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.4e-88 330.1 174 90.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.6e-84 316.6 227 71.8
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.1e-84 316.2 179 84.9
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.4e-82 308.5 233 70.0
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.0e-79 299.7 227 68.3
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 3.4e-74 282.3 230 59.1
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 6.3e-73 278.1 219 59.8
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 3.1e-72 275.8 206 63.1
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 9.1e-72 274.2 222 59.9
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.3e-70 269.6 149 86.6
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 3.8e-70 268.9 230 56.5
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-69 266.9 230 63.0
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 5.5e-69 265.0 174 74.7
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.4e-67 260.4 230 54.3
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.5e-66 256.9 233 60.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 6.3e-65 251.5 148 81.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.6e-62 241.1 141 82.3
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.9e-61 240.0 174 63.8
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 5.6e-53 211.8 221 46.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.7e-49 199.1 199 46.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.4e-40 169.9 124 66.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.1e-40 168.3 124 66.1
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.1e-40 168.3 124 66.1
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 3.9e-38 162.5 136 54.4
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.3e-37 159.1 194 48.5
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 4.3e-37 159.1 111 74.8
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.1e-36 156.8 87 83.9
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.0e-34 150.2 221 40.3
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.3e-33 147.5 232 40.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 7.1e-32 141.7 131 61.1
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.2e-32 141.4 78 85.9
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 4.3e-29 132.5 246 36.2
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.7e-22 110.5 75 77.3
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.7e-22 110.5 56 89.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 8.7e-22 108.2 56 92.9
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.9e-17 93.2 53 81.1
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 8.4e-17 91.7 94 55.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.1e-15 87.0 82 59.8
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.1e-13 81.3 50 74.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-13 80.5 94 53.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 8.4e-09 65.1 84 44.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-06 56.6 31 77.4
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-06 56.6 31 77.4
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-06 56.6 31 77.4
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-06 56.6 31 77.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-06 56.6 31 77.4


User provided reference genes

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