Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.1e-147 524.6 254 100.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-132 476.5 259 89.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-130 468.4 259 87.3
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 5.6e-128 461.1 255 87.8
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.8e-126 456.1 259 84.9
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 9.9e-125 450.3 260 84.2
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 6.7e-121 437.6 258 82.2
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 7.4e-120 434.1 256 81.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.1e-119 432.6 250 82.0
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.7e-119 431.8 256 80.1
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.7e-119 431.8 259 80.3
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 4.8e-119 431.4 258 79.8
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 6.2e-119 431.0 260 79.6
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.4e-118 429.9 263 78.7
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 4.0e-118 428.3 256 80.1
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.4e-117 425.2 258 78.7
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.8e-116 421.8 256 78.9
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.5e-115 419.1 256 77.3
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.2e-115 418.3 258 77.9
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 7.1e-115 417.5 258 77.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 9.3e-115 417.2 253 77.1
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 9.3e-115 417.2 256 78.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.2e-114 416.8 258 76.4
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.6e-114 416.4 258 76.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 6.0e-114 414.5 258 77.5
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.8e-113 412.9 256 78.1
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.1e-112 410.2 257 75.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.1e-112 410.2 275 72.4
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.5e-112 409.8 259 76.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.5e-112 409.8 256 74.2
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.5e-112 409.1 261 75.5
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.3e-112 408.7 258 76.4
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.3e-112 408.3 258 76.4
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.3e-112 408.3 253 75.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 5.7e-112 407.9 268 73.9
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 7.4e-112 407.5 267 73.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 9.6e-112 407.1 255 76.1
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 2.1e-111 406.0 262 75.6
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 2.1e-111 406.0 256 76.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.4e-110 403.3 258 73.3
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.6e-109 399.1 267 73.4
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.4e-109 398.7 275 72.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 4.5e-109 398.3 256 73.8
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 7.6e-109 397.5 256 72.7
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.3e-108 396.7 256 72.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.2e-108 396.0 265 72.8
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 2.2e-108 396.0 260 73.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 2.9e-108 395.6 267 72.3
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.0e-108 394.8 257 73.9
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.1e-107 393.7 256 73.8
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.4e-107 393.3 269 70.3
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.9e-107 392.9 258 75.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.2e-107 392.1 259 73.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.2e-107 392.1 258 74.4
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.5e-107 391.3 258 74.8
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.2e-106 390.2 255 73.3
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.1e-106 389.4 253 73.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 7.9e-106 387.5 260 70.8
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.1e-105 384.8 289 65.1
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 6.7e-105 384.4 256 71.1
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.7e-105 384.4 256 71.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.7e-105 384.0 256 71.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 8.7e-105 384.0 256 69.1
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.5e-104 382.5 256 71.1
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-103 380.2 254 71.3
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.6e-103 379.8 257 70.8
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.2e-103 379.4 316 61.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 2.2e-103 379.4 262 72.1
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.7e-103 378.6 254 70.9
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.7e-103 378.6 262 69.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.3e-103 377.9 249 69.5
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-102 377.1 254 70.5
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 70.3
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-102 377.1 251 70.9
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.4e-102 376.7 253 70.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.8e-102 376.3 216 79.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.4e-102 375.9 253 70.4
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.1e-102 375.6 253 70.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.1e-102 375.6 253 70.4
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.1e-102 375.6 254 69.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 5.3e-102 374.8 253 70.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 5.3e-102 374.8 253 69.6
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 6.9e-102 374.4 253 70.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 9.0e-102 374.0 253 69.6
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.2e-101 373.6 256 69.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.2e-101 373.6 256 69.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-101 372.9 253 70.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.0e-101 372.9 253 70.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.6e-101 372.5 253 69.6
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.4e-101 372.1 262 68.7
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 4.5e-101 371.7 262 68.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.9e-100 369.0 253 69.2
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.9e-100 369.0 256 69.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 3.8e-100 368.6 256 69.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 3.8e-100 368.6 211 81.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 6.5e-100 367.9 257 68.1
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.9e-99 366.3 237 75.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 4.2e-99 365.2 258 66.3
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.2e-99 365.2 258 68.6
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 5.5e-99 364.8 256 68.4
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.1e-98 361.3 256 67.6
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.0e-97 359.0 254 67.7
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.5e-96 356.7 256 68.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 9.7e-96 354.0 213 76.5
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.2e-95 352.8 253 64.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.4e-94 349.4 256 67.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 4.1e-94 348.6 253 64.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.1e-94 348.6 256 68.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.5e-93 346.7 195 83.1
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-93 346.7 258 65.9
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.0e-93 346.3 258 62.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.3e-92 343.6 236 72.5
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.5e-92 341.3 269 61.0
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.1e-91 340.5 211 75.4
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.2e-90 337.0 257 65.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 3.6e-90 335.5 197 80.7
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.0e-88 329.7 213 70.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 6.3e-87 324.7 191 81.7
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.1e-86 323.9 191 77.5
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.1e-86 323.9 273 56.8
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.1e-86 322.0 197 76.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.1e-86 322.0 211 67.3
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 7.0e-86 321.2 243 65.4
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-82 310.1 182 80.2
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 6.7e-81 304.7 204 72.1
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-79 299.7 170 82.9
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.6e-77 293.5 239 59.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.3e-76 290.4 253 58.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.8e-76 288.9 226 63.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.0e-76 288.5 308 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.9e-75 286.6 249 56.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.2e-73 278.5 230 57.4
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 8.0e-66 254.6 232 53.4
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.0e-65 254.2 360 43.6
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.8e-65 253.4 182 67.6
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.3e-59 232.6 215 56.3
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.1e-58 229.9 155 69.0
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.0e-57 225.7 234 50.9
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-56 223.4 264 50.0
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-53 214.2 179 55.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.7e-47 193.7 178 53.9
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.1e-46 191.0 147 63.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.2e-45 187.6 133 66.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.9e-44 182.6 123 69.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 6.2e-42 175.3 251 37.5
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.4e-40 169.5 124 66.1
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.5e-37 159.5 315 33.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.8e-37 158.3 103 69.9
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-36 157.5 169 56.2
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 3.9e-36 156.0 96 74.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-32 143.7 173 43.4
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.6e-32 141.7 247 36.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.5e-27 127.5 165 43.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-27 127.1 120 53.3
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.6e-26 122.9 100 60.0
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.2e-22 109.8 58 82.8
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-21 107.1 55 94.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-21 107.1 55 94.5
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-20 102.1 79 62.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.1e-18 95.1 119 41.2
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 9.0e-17 91.7 55 74.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.3e-15 87.8 80 58.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.6e-10 70.9 44 68.2
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.6e-10 70.9 44 68.2
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.8e-09 67.4 49 63.3
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 3.1e-09 66.6 56 50.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.6e-08 63.5 36 83.3
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 5.8e-08 62.4 51 52.9
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.8e-08 62.4 40 62.5
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 6.4e-07 58.9 34 73.5


User provided reference genes

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