Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.8e-237 825.5 413 100.0
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 9.5e-218 760.0 410 91.2
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.5e-215 752.7 413 90.1
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-210 736.1 413 88.6
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 7.3e-210 733.8 413 88.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.1e-209 732.3 413 88.4
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 6.2e-209 730.7 413 86.9
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-208 729.9 413 87.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.0e-208 728.0 413 87.7
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 8.4e-206 720.3 413 84.3
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 9.3e-205 716.8 412 85.2
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.5e-202 708.8 413 83.1
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.1e-201 705.7 413 83.1
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.4e-200 702.2 413 82.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 5.3e-200 701.0 411 83.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.0e-199 699.1 413 83.5
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.6e-199 698.7 413 83.5
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.2e-198 695.7 413 82.3
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 3.2e-197 691.8 414 81.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 9.3e-197 690.3 413 81.4
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.2e-196 689.9 413 79.9
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.2e-196 689.9 414 82.1
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.6e-196 689.5 412 81.8
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 2.7e-196 688.7 413 80.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-195 686.8 413 81.1
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.0e-195 685.3 415 80.7
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.5e-194 682.9 415 81.2
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.5e-194 682.9 417 80.1
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.9e-194 682.6 415 80.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.5e-194 682.2 414 81.2
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.5e-194 682.2 418 80.1
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.3e-194 681.8 415 80.5
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.3e-194 681.8 415 81.2
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.3e-193 679.9 413 80.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 4.0e-192 674.9 413 79.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 6.9e-192 674.1 415 80.7
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.2e-191 673.3 417 80.3
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 1.2e-191 673.3 412 81.1
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.5e-191 672.9 415 80.0
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.6e-191 672.2 413 79.2
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.4e-191 671.8 413 79.2
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.4e-191 671.8 413 81.1
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 5.8e-191 671.0 417 79.9
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.7e-190 669.5 412 79.4
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 6.4e-190 667.5 413 78.9
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.4e-189 666.4 413 78.2
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.4e-189 664.5 411 78.8
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.6e-188 662.9 414 79.0
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.6e-188 662.9 414 78.7
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.0e-188 661.0 412 78.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.0e-187 660.2 413 78.2
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.8e-187 659.4 413 77.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.3e-186 654.8 413 78.0
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.3e-185 653.3 415 77.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.6e-185 652.9 413 78.5
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.8e-185 652.1 413 75.3
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 2.8e-185 652.1 445 73.0
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 3.7e-185 651.7 411 77.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 6.2e-185 651.0 409 77.8
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 6.2e-185 651.0 415 78.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.4e-184 649.0 410 77.6
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 3.1e-184 648.7 413 76.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 5.3e-184 647.9 414 77.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.3e-184 647.9 413 77.7
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.2e-181 638.3 413 75.5
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 4.2e-181 638.3 403 78.9
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.1e-180 636.0 410 75.1
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.5e-180 635.2 409 75.6
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.8e-179 632.9 456 70.2
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 3.0e-179 632.1 376 81.9
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 8.7e-179 630.6 411 75.2
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.1e-178 630.2 409 74.1
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.9e-178 629.4 411 75.2
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.3e-178 628.6 412 73.8
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 75.7
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 74.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 74.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 74.7
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 4.3e-178 628.2 414 74.9
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 75.2
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.3e-178 628.2 414 74.6
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.6e-178 627.1 415 74.5
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.3e-177 626.7 414 75.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.3e-177 626.7 479 67.0
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.8e-177 625.5 413 73.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.8e-177 624.8 413 74.1
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.8e-176 622.9 414 74.2
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.5e-175 619.8 418 73.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.5e-175 619.8 411 73.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.0e-175 619.4 414 73.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.0e-175 619.4 414 73.7
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.4e-175 618.6 414 73.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.5e-175 618.2 411 73.5
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.5e-175 618.2 414 73.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 5.8e-175 617.8 411 74.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 73.4
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 7.6e-175 617.5 410 73.7
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-174 617.1 414 73.2
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-174 616.7 414 73.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.9e-174 615.5 411 74.2
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 2.9e-174 615.5 418 72.2
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.8e-174 615.1 414 72.9
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 8.4e-174 614.0 415 72.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-173 612.5 415 72.3
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 5.5e-173 611.3 411 72.0
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.2e-173 610.9 411 72.3
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.5e-172 608.6 418 72.7
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.3e-171 605.9 509 63.5
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.9e-170 602.8 413 70.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 4.3e-170 601.7 414 70.8
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.8e-169 599.0 420 72.4
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.0e-166 590.5 413 69.0
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 7.2e-165 584.3 467 64.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.7e-156 555.8 418 66.5
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 6.1e-156 554.7 350 77.7
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 7.4e-154 547.7 430 64.4
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 7.0e-152 541.2 410 63.4
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 4.4e-146 521.9 306 82.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.0e-143 513.1 410 61.0
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 4.2e-141 505.4 330 75.2
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.6e-140 502.3 334 75.7
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-138 496.5 348 70.4
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.2e-137 493.0 411 57.4
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.7e-132 475.3 342 71.1
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.0e-131 474.2 419 59.2
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 4.9e-129 465.3 418 57.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 5.4e-128 461.8 410 56.6
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.7e-126 456.8 418 56.7
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-109 401.0 234 82.5
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.7e-103 379.8 243 74.9
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.0e-86 324.7 433 43.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.5e-79 299.7 181 79.6
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.4e-75 287.0 390 43.1
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 5.5e-72 275.8 237 60.8
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.9e-64 250.8 329 43.2
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.6e-55 219.9 181 64.1
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.5e-50 204.5 256 49.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.8e-46 191.0 113 81.4
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 4.2e-40 169.9 219 44.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.4e-38 164.9 152 53.9
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 8.0e-31 139.0 86 75.6
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.8e-30 137.9 80 80.0
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 4.1e-27 126.7 84 67.9
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.2e-24 116.7 90 63.3
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 3.6e-23 113.6 183 43.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.3e-22 110.9 86 65.1
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.3e-22 110.9 86 65.1
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.0e-22 110.5 83 63.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 9.8e-21 105.5 86 64.0
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.3e-20 105.1 74 64.9
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.3e-20 105.1 74 64.9
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 3.7e-20 103.6 74 64.9
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.1e-19 100.5 81 60.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 7.7e-18 95.9 73 61.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 7.2e-16 89.4 66 62.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 7.5e-13 79.3 65 55.4
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.3e-12 78.6 59 61.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 2.2e-12 77.8 86 51.2
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.8e-11 74.7 112 42.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.4e-11 74.3 112 41.1


User provided reference genes

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