Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-74 282.0 144 100.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-63 246.5 176 76.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 7.5e-61 237.3 176 72.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.7e-60 236.1 176 72.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-60 236.1 124 99.2
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-60 236.1 124 99.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-60 235.7 124 98.4
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-60 235.0 124 98.4
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.1e-59 231.9 176 71.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.0e-58 229.2 176 70.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-58 229.2 176 70.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.5e-58 228.4 176 70.5
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.5e-58 228.0 158 75.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.8e-58 227.3 176 69.9
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.3e-57 225.7 166 71.7
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.8e-57 224.9 165 72.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.0e-57 224.6 166 71.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 5.0e-57 224.6 166 72.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-56 223.4 166 71.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.1e-56 223.4 166 71.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.1e-56 223.4 166 71.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.5e-56 223.0 166 71.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.5e-56 223.0 166 69.9
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.9e-56 222.6 166 71.7
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.5e-56 222.2 166 71.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 7.3e-56 220.7 166 71.1
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.3e-56 220.7 166 71.1
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 7.3e-56 220.7 165 70.3
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.2e-55 219.9 166 69.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.2e-55 219.9 166 68.7
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.2e-55 219.9 166 70.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.2e-55 219.9 166 68.7
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.2e-55 219.9 166 68.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.6e-55 219.5 166 68.7
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.1e-55 219.2 165 70.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.1e-55 219.2 166 70.5
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.1e-55 219.2 165 69.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.8e-55 218.8 166 70.5
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.8e-55 218.8 166 69.3
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 3.6e-55 218.4 166 69.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 3.6e-55 218.4 165 69.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.7e-55 218.0 193 64.2
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.7e-55 218.0 193 64.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.1e-55 217.6 165 69.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.0e-55 217.2 166 69.9
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.0e-54 216.9 166 69.9
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-54 216.9 193 63.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.0e-54 216.9 166 68.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.8e-54 216.1 166 68.7
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-54 216.1 185 67.6
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.8e-54 216.1 166 69.3
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.8e-54 216.1 166 69.3
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.0e-54 215.3 166 68.7
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 4.0e-54 214.9 166 69.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.0e-54 214.9 166 69.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.8e-54 214.2 167 68.3
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.8e-54 214.2 165 68.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 6.8e-54 214.2 166 68.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 8.9e-54 213.8 166 68.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 8.9e-54 213.8 123 89.4
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.9e-54 213.8 165 68.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 8.9e-54 213.8 166 68.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-53 213.0 167 67.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.5e-53 213.0 166 68.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.6e-53 212.2 164 69.5
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.6e-53 212.2 165 69.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.4e-53 211.8 166 68.7
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 4.4e-53 211.5 166 69.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 4.4e-53 211.5 166 68.7
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.4e-53 211.5 166 68.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 5.8e-53 211.1 166 67.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.3e-52 209.9 166 68.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.3e-52 209.9 166 67.5
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.7e-52 209.5 166 67.5
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.2e-52 209.1 166 66.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.9e-52 208.0 166 67.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 8.3e-52 207.2 114 90.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.1e-51 206.8 165 66.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-51 206.8 135 83.0
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.4e-51 206.5 183 61.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.4e-51 204.5 189 60.8
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 7.0e-51 204.1 204 57.8
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.2e-50 203.4 195 58.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.2e-50 203.4 166 64.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-50 203.0 179 61.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.6e-50 203.0 114 87.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.7e-50 202.2 166 65.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.7e-50 202.2 166 65.1
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.7e-50 202.2 166 65.1
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.7e-50 202.2 166 65.1
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.0e-50 201.1 166 64.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 7.8e-50 200.7 149 71.1
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.0e-49 200.3 166 62.7
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-49 199.9 150 70.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-49 199.5 166 64.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.0e-49 198.7 166 63.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.9e-49 198.4 136 77.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.0e-49 198.0 166 63.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.0e-49 198.0 211 54.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.0e-49 198.0 149 69.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.6e-49 197.6 166 63.3
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.1e-48 196.8 149 69.8
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.1e-48 196.8 149 69.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.5e-48 196.4 166 63.3
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.5e-48 196.4 114 85.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.3e-48 195.3 136 76.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.3e-48 194.9 166 62.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 7.3e-48 194.1 149 69.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 9.5e-48 193.7 136 73.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.1e-47 192.6 166 63.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-47 192.6 166 63.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.1e-47 192.6 172 62.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.1e-47 192.6 171 59.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.8e-47 192.2 166 60.8
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.6e-47 191.8 145 69.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.0e-46 188.3 148 67.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 5.2e-46 188.0 172 59.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 6.8e-46 187.6 166 57.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-45 186.8 114 82.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.5e-45 186.4 142 69.0
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.8e-45 184.5 148 67.6
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.5e-45 184.1 147 65.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 7.5e-45 184.1 166 56.6
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.7e-44 183.0 162 61.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.4e-43 179.1 114 78.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.4e-43 179.1 115 80.0
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.2e-43 178.7 147 65.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.0e-43 177.6 149 63.8
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.6e-42 174.9 114 78.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.6e-42 174.9 114 78.1
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.8e-42 174.1 137 68.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 7.8e-42 174.1 159 61.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.3e-41 172.6 236 46.2
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 6.6e-41 171.0 149 62.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.3e-40 168.3 115 70.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-39 166.0 104 83.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-38 162.9 99 82.8
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.1e-38 162.2 114 69.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 4.0e-38 161.8 97 82.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.0e-37 159.5 139 56.8
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.4e-37 158.7 83 94.0
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.2e-36 156.0 124 63.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.2e-36 156.0 123 65.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.9e-36 155.6 126 61.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.3e-36 154.1 133 61.7
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.0e-33 145.6 83 86.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.2e-28 129.4 102 62.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.1e-27 125.2 105 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-26 123.6 93 67.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.7e-26 122.5 73 84.9
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-25 120.6 82 70.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-22 110.5 97 61.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-21 107.1 74 68.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-18 97.1 64 71.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 6.0e-18 94.7 90 55.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.9e-17 92.0 65 72.3
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-15 85.9 49 87.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.9e-12 75.1 116 36.2
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 8.4e-12 74.3 90 43.3
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-11 72.8 88 55.7
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.7e-10 69.3 90 43.3


User provided reference genes

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