Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G246600 Prunus persica HOM05D003358 ORTHO05D003864 2.4e-81 305.4 156 100.0
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.2e-21 106.3 134 44.8
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 1.4e-20 103.6 121 49.6
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 6.1e-16 88.2 120 47.5
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 6.1e-16 88.2 120 45.8
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 8.0e-16 87.8 119 45.4
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.0e-15 87.4 119 43.7
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 1.0e-15 87.4 120 44.2
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.4e-15 87.0 120 44.2
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.3e-15 86.3 120 43.3
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 3.0e-15 85.9 119 42.9
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 3.0e-15 85.9 119 44.5
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 3.0e-15 85.9 120 45.0
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.9e-15 85.5 120 45.8
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 5.2e-15 85.1 119 43.7
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 5.2e-15 85.1 120 43.3
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 5.2e-15 85.1 120 45.8
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 6.7e-15 84.7 120 41.7
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 6.7e-15 84.7 120 43.3
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 6.7e-15 84.7 120 42.5
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 6.7e-15 84.7 120 42.5
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 6.7e-15 84.7 120 44.2
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 8.8e-15 84.3 122 42.6
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 8.8e-15 84.3 120 43.3
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 8.8e-15 84.3 119 42.9
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-14 84.0 120 41.7
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-14 84.0 120 41.7
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.1e-14 84.0 120 41.7
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 1.1e-14 84.0 119 42.9
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.1e-14 84.0 120 44.2
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.1e-14 84.0 120 42.5
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 1.5e-14 83.6 120 43.3
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.5e-14 83.6 117 42.7
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 2.0e-14 83.2 120 39.2
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 2.0e-14 83.2 120 41.7
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 2.0e-14 83.2 120 42.5
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 2.6e-14 82.8 118 43.2
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 2.6e-14 82.8 118 43.2
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 2.6e-14 82.8 120 44.2
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 2.6e-14 82.8 120 41.7
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 2.6e-14 82.8 120 42.5
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 2.6e-14 82.8 118 42.4
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 2.6e-14 82.8 118 42.4
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 2.6e-14 82.8 120 43.3
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 3.3e-14 82.4 120 43.3
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 3.3e-14 82.4 119 42.0
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 3.3e-14 82.4 120 43.3
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 3.3e-14 82.4 120 43.3
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 3.3e-14 82.4 120 43.3
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 4.4e-14 82.0 118 39.0
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 4.4e-14 82.0 120 45.0
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 4.4e-14 82.0 118 42.4
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 5.7e-14 81.6 120 43.3
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 5.7e-14 81.6 120 43.3
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 5.7e-14 81.6 118 41.5
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 7.4e-14 81.3 120 40.0
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 7.4e-14 81.3 118 43.2
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 7.4e-14 81.3 116 44.0
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 9.7e-14 80.9 120 40.8
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 9.7e-14 80.9 120 42.5
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 9.7e-14 80.9 120 41.7
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.3e-13 80.5 120 37.5
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.3e-13 80.5 118 38.1
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.3e-13 80.5 118 38.1
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.3e-13 80.5 120 40.0
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.3e-13 80.5 120 40.0
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 1.3e-13 80.5 118 43.2
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 1.7e-13 80.1 118 42.4
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.7e-13 80.1 120 42.5
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 2.2e-13 79.7 120 42.5
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.2e-13 79.7 120 41.7
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.2e-13 79.7 120 41.7
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 2.2e-13 79.7 120 40.8
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 2.8e-13 79.3 118 38.1
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 2.8e-13 79.3 119 42.0
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 3.7e-13 79.0 118 40.7
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 3.7e-13 79.0 118 40.7
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 3.7e-13 79.0 86 48.8
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 3.7e-13 79.0 119 42.0
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 4.8e-13 78.6 119 40.3
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 6.3e-13 78.2 120 42.5
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 6.3e-13 78.2 120 42.5
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 6.3e-13 78.2 120 41.7
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 8.2e-13 77.8 121 39.7
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 8.2e-13 77.8 119 40.3
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 8.2e-13 77.8 119 40.3
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 8.2e-13 77.8 119 40.3
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 8.2e-13 77.8 119 40.3
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.1e-12 77.4 121 39.7
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.1e-12 77.4 119 39.5
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 1.1e-12 77.4 119 39.5
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 1.1e-12 77.4 120 40.8
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.4e-12 77.0 120 40.0
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 37.8
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 1.4e-12 77.0 118 41.5
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.4e-12 77.0 119 40.3
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.4e-12 76.3 120 40.8
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 2.4e-12 76.3 119 37.8
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.4e-12 76.3 120 39.2
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 3.1e-12 75.9 119 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 4.1e-12 75.5 120 39.2
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 4.1e-12 75.5 120 40.8
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 4.1e-12 75.5 120 39.2
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 7.0e-12 74.7 118 39.8
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 9.1e-12 74.3 118 39.8
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 9.1e-12 74.3 120 38.3
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.2e-11 73.9 120 39.2
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 2.6e-11 72.8 120 39.2
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.6e-11 72.8 120 40.0
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 3.5e-11 72.4 111 43.2
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 4.5e-11 72.0 125 36.8
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 5.9e-11 71.6 115 39.1
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 7.7e-11 71.2 102 43.1
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 1.7e-10 70.1 134 31.3
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 5.0e-10 68.6 100 39.0
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 6.5e-10 68.2 121 37.2
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.9e-09 66.6 136 36.8
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.2e-09 65.9 120 36.7
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 3.2e-09 65.9 78 44.9
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 4.7e-08 62.0 121 31.4
Migut.N02166 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.4e-07 60.5 121 34.7
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 5.2e-07 58.5 121 36.4
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 6.7e-07 58.2 85 42.4
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 6.7e-07 58.2 71 47.9
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.2e-06 57.4 133 33.8
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 1.2e-06 57.4 80 45.0
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 1.5e-06 57.0 86 43.0
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 2.0e-06 56.6 85 41.2
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 2.6e-06 56.2 82 41.5
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 2.6e-06 56.2 82 41.5
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 5.7e-06 55.1 71 43.7


User provided reference genes

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