Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.4e-27 125.6 64 100.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 5.0e-17 90.5 58 77.6
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 3.3e-16 87.8 62 72.6
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.3e-16 87.8 68 67.6
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 7.3e-16 86.7 62 74.2
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.2e-15 85.9 59 74.6
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.2e-15 85.9 59 74.6
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.6e-15 85.5 73 65.8
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.8e-15 84.7 62 71.0
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.8e-15 84.7 57 75.4
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.8e-15 84.7 62 72.6
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.6e-15 84.3 67 67.2
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.4e-14 82.4 64 65.6
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.8e-14 82.0 60 68.3
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 3.1e-14 81.3 57 71.9
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.0e-14 80.9 60 68.3
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 4.0e-14 80.9 70 65.7
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 6.8e-14 80.1 61 65.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 3.4e-13 77.8 63 61.9
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 4.4e-13 77.4 58 70.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.4e-13 77.4 52 73.1
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 5.8e-13 77.0 45 84.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 7.5e-13 76.6 63 65.1
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 7.5e-13 76.6 56 76.8
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 7.5e-13 76.6 50 70.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 7.5e-13 76.6 50 70.0
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.2e-12 75.1 54 68.5
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.2e-12 75.1 50 74.0
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.9e-12 74.7 61 65.6
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.9e-12 74.7 58 63.8
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 3.7e-12 74.3 52 71.2
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 4.9e-12 73.9 61 60.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.4e-12 73.6 52 65.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 6.4e-12 73.6 61 62.3
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 8.3e-12 73.2 61 60.7
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 8.3e-12 73.2 51 74.5
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.1e-11 72.8 52 65.4
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.1e-11 72.8 52 65.4
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.1e-11 72.8 52 65.4
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 1.1e-11 72.8 62 56.5
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.4e-11 72.4 65 58.5
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.4e-11 72.4 61 59.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.9e-11 72.0 60 63.3
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.9e-11 72.0 45 77.8
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 4.1e-11 70.9 52 63.5
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 4.1e-11 70.9 52 63.5
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 5.4e-11 70.5 61 57.4
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 5.4e-11 70.5 48 66.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 7.0e-11 70.1 57 63.2
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 7.0e-11 70.1 52 61.5
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 9.2e-11 69.7 43 76.7
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.2e-10 69.3 62 53.2
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.2e-10 69.3 50 62.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.0e-10 68.6 57 63.2
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.0e-10 68.6 52 61.5
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.0e-10 68.6 52 63.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.7e-10 68.2 50 62.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 3.5e-10 67.8 62 53.2
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.5e-10 67.8 47 68.1
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 4.6e-10 67.4 62 58.1
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 4.6e-10 67.4 62 53.2
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 4.6e-10 67.4 57 63.2
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.0e-09 66.2 63 58.7
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.3e-09 65.9 56 57.1
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.3e-09 65.9 63 52.4
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.7e-09 65.5 55 56.4
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.3e-09 65.1 43 76.7
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.0e-09 64.7 50 62.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 3.9e-09 64.3 63 58.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 5.0e-09 63.9 52 59.6
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.6e-09 63.5 52 59.6
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.1e-08 62.8 75 53.3
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.5e-08 62.4 50 58.0
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.9e-08 62.0 62 54.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 1.9e-08 62.0 64 54.7
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 3.3e-08 61.2 48 56.2
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 4.3e-08 60.8 44 63.6
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 4.3e-08 60.8 55 58.2
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.6e-08 60.5 37 75.7
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 7.3e-08 60.1 45 62.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 7.3e-08 60.1 55 58.2
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.6e-07 58.9 43 62.8
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.6e-07 58.9 50 60.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.8e-07 58.2 50 60.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.8e-07 58.2 63 52.4
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 3.6e-07 57.8 58 46.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 4.7e-07 57.4 50 58.0
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 5.2e-06 53.9 44 54.5


User provided reference genes

Program Settings