Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 3.7e-70 268.1 134 100.0
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 2.1e-57 225.7 132 84.8
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.0e-48 196.8 128 76.6
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.4e-48 196.4 131 75.6
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 1.4e-48 196.4 141 70.2
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 3.0e-48 195.3 131 73.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 3.4e-47 191.8 131 73.3
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 3.7e-46 188.3 145 67.6
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 9.1e-45 183.7 160 61.9
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 2.0e-44 182.6 134 68.7
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 5.6e-42 174.5 147 61.9
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 6.1e-41 171.0 129 66.7
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.4e-40 169.9 135 65.2
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 2.3e-40 169.1 152 58.6
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 2.3e-40 169.1 152 58.6
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 3.0e-40 168.7 161 58.4
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 5.2e-40 167.9 164 59.8
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 5.2e-40 167.9 133 63.9
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 8.9e-40 167.2 130 66.9
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.2e-39 166.8 129 65.9
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 4.4e-39 164.9 131 64.1
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 4.4e-39 164.9 131 62.6
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 5.7e-39 164.5 128 64.8
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 5.7e-39 164.5 133 63.2
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 1.7e-38 162.9 130 63.1
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 1.1e-37 160.2 133 60.9
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.1e-37 160.2 131 64.1
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.8e-37 159.5 132 61.4
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 2.4e-37 159.1 170 52.4
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 9.2e-37 157.1 133 60.9
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 3.5e-36 155.2 134 55.2
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 7.8e-36 154.1 134 59.7
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 1.7e-35 152.9 134 59.7
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 2.3e-35 152.5 129 58.1
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 2.3e-35 152.5 134 60.4
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 3.9e-35 151.8 131 61.1
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 5.0e-35 151.4 129 58.1
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 5.0e-35 151.4 159 54.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 6.6e-35 151.0 146 52.7
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 8.6e-35 150.6 145 55.9
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.1e-34 150.2 132 58.3
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.3e-34 148.7 173 49.7
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 4.3e-34 148.3 170 50.0
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 7.3e-34 147.5 138 54.3
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 9.5e-34 147.1 163 48.5
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.1e-33 146.0 166 50.6
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.6e-33 145.2 157 52.9
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 3.6e-33 145.2 127 57.5
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 8.0e-33 144.1 128 58.6
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 1.0e-32 143.7 137 51.1
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.8e-32 142.9 147 52.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 2.3e-32 142.5 136 52.9
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 2.3e-32 142.5 143 54.5
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.3e-32 142.5 138 52.2
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 2.0e-31 139.4 141 51.8
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 2.6e-31 139.0 145 52.4
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 1.7e-30 136.3 157 49.0
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 4.9e-30 134.8 151 49.0
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 8.3e-30 134.0 151 49.0
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 1.1e-29 133.7 160 48.1
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 1.1e-29 133.7 137 48.9
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.4e-29 133.3 168 47.0
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 3.2e-29 132.1 128 53.9
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 4.6e-28 128.3 136 50.7
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 7.8e-28 127.5 128 50.8
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.0e-27 127.1 158 46.8
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 3.0e-27 125.6 94 64.9
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 3.0e-27 125.6 94 64.9
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 2.5e-26 122.5 159 45.9
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 7.3e-26 120.9 185 41.6
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 1.2e-25 120.2 126 50.0
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.1e-24 117.1 147 44.2
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 5.2e-24 114.8 129 49.6
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 8.9e-24 114.0 133 48.1
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 1.2e-23 113.6 127 54.3
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 2.0e-23 112.8 144 47.9
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 3.4e-23 112.1 163 42.3
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 7.5e-23 110.9 186 39.2
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.7e-22 109.8 163 42.3
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 2.2e-22 109.4 100 60.0
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 3.7e-22 108.6 135 45.9
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 5.4e-21 104.8 130 45.4
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 7.1e-21 104.4 164 40.9
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 3.5e-20 102.1 80 66.2
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 3.5e-20 102.1 140 43.6
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 6.0e-20 101.3 133 43.6
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 6.0e-20 101.3 139 42.4
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 1.0e-19 100.5 201 36.3
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 3.9e-19 98.6 164 39.0
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 6.6e-19 97.8 134 41.8
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 6.6e-19 97.8 121 48.8
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 1.9e-18 96.3 201 35.8
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 4.3e-18 95.1 128 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 7.3e-18 94.4 130 43.8
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 3.6e-17 92.0 190 36.8
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 8.1e-17 90.9 144 38.2
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.2e-15 87.0 76 59.2
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 2.6e-15 85.9 154 35.7
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 5.8e-15 84.7 127 44.9
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 9.9e-15 84.0 106 47.2
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.3e-14 83.6 76 57.9
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.3e-14 83.6 76 57.9
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.3e-14 83.6 76 57.9
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 3.7e-14 82.0 47 76.6
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 2.4e-13 79.3 99 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 3.2e-13 79.0 111 42.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 4.1e-13 78.6 130 38.5
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 1.2e-12 77.0 95 48.4
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.6e-12 76.6 69 58.0
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 7.8e-12 74.3 71 56.3
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 6.6e-11 71.2 103 47.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 5.6e-10 68.2 117 38.5
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 2.1e-09 66.2 106 36.8
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 3.1e-08 62.4 52 61.5
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 7.6e-07 57.8 52 59.6
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 2.2e-06 56.2 118 34.7
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 2.9e-06 55.8 89 38.2


User provided reference genes

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