Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 1.2e-283 979.2 493 100.0
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 8.1e-232 807.0 499 82.8
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 8.4e-221 770.4 495 80.0
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 1.9e-217 759.2 496 79.4
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 4.8e-216 754.6 435 86.0
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 1.4e-215 753.1 496 78.8
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 3.8e-205 718.4 515 74.0
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.6e-193 679.1 494 70.2
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 7.4e-185 651.0 492 67.9
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 5.5e-180 634.8 493 66.1
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 5.5e-180 634.8 493 67.3
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 7.2e-180 634.4 493 66.1
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 1.4e-178 630.2 459 69.7
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 6.7e-178 627.9 471 68.4
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 8.8e-178 627.5 565 60.4
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 3.5e-174 615.5 493 62.7
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 2.2e-173 612.8 495 64.6
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 2.9e-173 612.5 489 65.2
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.1e-172 610.5 494 61.9
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 1.9e-172 609.8 496 62.5
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.2e-171 607.1 495 64.2
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 3.0e-170 602.4 495 63.8
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 8.8e-170 600.9 497 63.8
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.5e-169 600.1 495 63.4
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 1.7e-168 596.7 501 62.5
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.1e-167 594.0 499 62.5
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 3.1e-167 592.4 490 62.4
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 4.5e-166 588.6 497 61.2
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 5.0e-165 585.1 507 60.9
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 8.6e-165 584.3 459 63.6
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.9e-164 583.2 499 61.9
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 2.8e-163 579.3 506 60.5
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 6.1e-163 578.2 467 63.0
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.4e-162 577.0 492 60.4
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 1.8e-162 576.6 464 63.1
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 3.0e-162 575.9 433 64.2
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 4.0e-162 575.5 439 64.5
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 5.2e-162 575.1 464 62.7
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 5.2e-162 575.1 425 65.2
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 1.2e-161 573.9 433 64.2
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 1.5e-161 573.5 471 62.2
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 5.7e-161 571.6 420 65.0
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 1.3e-160 570.5 421 65.6
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 1.7e-160 570.1 466 61.4
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 2.2e-160 569.7 434 65.9
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 2.2e-160 569.7 485 59.2
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 2.8e-160 569.3 437 65.7
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 2.8e-160 569.3 416 66.3
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 3.7e-160 568.9 463 61.3
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 1.1e-159 567.4 427 65.3
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.4e-159 567.0 493 59.4
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 2.4e-159 566.2 465 60.9
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 2.4e-159 566.2 432 64.1
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 3.1e-159 565.8 453 62.5
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 7.0e-159 564.7 495 59.0
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 7.0e-159 564.7 459 62.1
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 4.5e-158 562.0 418 66.3
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 4.5e-158 562.0 505 59.6
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 1.0e-157 560.8 474 60.5
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 1.3e-157 560.5 488 57.8
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 1.3e-157 560.5 443 63.7
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 1.7e-157 560.1 447 63.1
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 1.7e-157 560.1 445 61.3
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 1.6e-155 553.5 489 58.7
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.6e-155 553.5 425 62.4
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 2.1e-155 553.1 493 57.0
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 4.7e-155 552.0 481 59.0
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 1.4e-154 550.4 486 57.6
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.2e-153 547.4 432 61.6
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.7e-152 542.3 495 54.7
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 1.4e-151 540.4 493 54.6
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 1.2e-150 537.3 487 56.9
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.2e-150 537.3 407 62.9
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 1.6e-150 537.0 376 66.5
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 2.0e-150 536.6 394 67.0
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 2.0e-150 536.6 417 64.7
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 2.7e-150 536.2 516 57.8
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 7.8e-150 534.6 433 59.6
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 1.1e-148 530.8 454 58.6
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 4.3e-148 528.9 487 56.3
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 5.2e-146 521.9 371 67.7
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 4.4e-145 518.8 405 63.7
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 2.2e-144 516.5 481 57.8
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 2.9e-144 516.2 495 56.4
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 1.4e-143 513.8 501 55.5
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 2.1e-142 510.0 433 57.5
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 8.9e-138 494.6 464 55.6
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.2e-134 484.2 431 56.1
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 3.0e-133 479.6 419 56.8
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 5.1e-133 478.8 371 60.6
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 1.2e-131 474.2 460 53.7
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 3.1e-130 469.5 368 61.4
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 3.4e-129 466.1 392 63.3
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 1.3e-125 454.1 415 55.4
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 4.7e-123 445.7 428 53.3
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.8e-109 400.6 429 49.7
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.9e-108 397.1 286 68.9
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.4e-106 391.0 430 48.8
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 1.5e-100 370.9 441 44.9
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 1.7e-96 357.5 427 42.9
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 4.5e-89 332.8 222 68.5
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.5e-87 327.0 303 53.5
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 1.6e-86 324.3 426 40.1
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 2.5e-84 317.0 402 42.5
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 4.8e-83 312.8 398 45.7
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 2.9e-80 303.5 274 59.1
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 2.3e-77 293.9 311 53.4
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 1.7e-72 277.7 277 56.7
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 7.7e-57 225.7 221 52.9
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 2.3e-53 214.2 459 34.4
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 2.4e-50 204.1 471 31.0
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 7.3e-39 166.0 172 52.9
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 5.8e-36 156.4 105 68.6
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 1.2e-33 148.7 123 60.2
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 1.7e-32 144.8 100 67.0
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.6e-30 138.3 116 57.8
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 1.4e-29 135.2 135 60.0
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 8.9e-29 132.5 93 61.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.9e-27 126.7 410 27.8
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.1e-26 125.6 88 68.2
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 3.5e-17 94.0 92 47.8
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 2.5e-15 87.8 93 52.7
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.1e-13 82.4 69 55.1
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 8.9e-13 79.3 102 49.0
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 8.4e-11 72.8 51 60.8
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 1.5e-07 62.0 114 42.1
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 8.1e-06 56.2 58 50.0


User provided reference genes

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