Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1834.3 949 100.0
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1582.0 939 85.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1488.8 940 79.6
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1488.4 942 79.6
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1481.8 938 79.5
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1481.5 938 79.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1467.6 941 78.5
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1296.2 949 71.0
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1288.1 949 70.6
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1278.5 959 68.7
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1274.6 943 68.4
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1273.5 947 68.6
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1272.7 936 67.6
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1271.5 952 68.9
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1270.8 952 68.4
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1270.4 938 67.6
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1269.2 949 68.2
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1260.4 952 67.8
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1257.3 946 67.8
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1256.9 953 68.0
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1255.7 946 67.7
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1255.4 934 67.2
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1245.3 955 66.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1242.6 937 66.8
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1241.9 948 68.1
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1241.9 929 65.9
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1239.2 952 67.2
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1233.0 932 65.9
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1223.0 994 65.2
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1222.2 950 66.2
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1211.8 942 64.3
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1211.4 943 67.4
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1209.5 936 66.1
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1205.7 943 64.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1201.8 931 68.1
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1196.8 949 64.8
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1192.9 966 63.1
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1185.6 947 64.0
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1185.6 946 62.7
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1181.0 940 63.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1173.3 998 62.1
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1169.1 940 62.8
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1169.1 947 62.7
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1163.7 941 62.6
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1163.3 935 62.9
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1162.5 937 62.2
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1161.0 936 63.1
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1159.8 937 62.2
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1159.8 937 62.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1158.3 948 61.4
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1156.4 937 62.4
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1152.1 911 63.9
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1149.4 911 63.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1146.0 943 61.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1142.9 934 61.9
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1137.1 937 61.6
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1135.2 938 60.8
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1135.2 940 61.2
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1130.9 937 62.2
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1127.9 938 61.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1124.8 958 60.6
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1122.1 944 61.3
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1121.3 944 60.6
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1119.0 946 60.4
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1117.4 955 59.8
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1116.3 954 60.5
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1115.5 854 67.4
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1113.6 936 61.0
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1102.0 945 59.6
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 959 59.6
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1093.2 936 60.5
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1090.5 826 67.1
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1087.0 946 58.4
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 0.0e+00 1086.2 942 60.5
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1085.1 950 58.7
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 3.9e-307 1058.1 940 57.6
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.1e-306 1056.6 954 57.5
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 7.6e-303 1043.9 805 65.6
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.8e-299 1032.7 946 56.7
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 2.5e-298 1028.9 885 59.4
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 4.8e-297 1024.6 943 56.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-294 1016.5 768 66.8
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 5.1e-291 1004.6 960 55.2
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.3e-289 1000.0 960 54.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.3e-286 989.9 932 56.4
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.5e-274 949.9 737 67.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 5.9e-271 937.9 933 52.7
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 5.1e-267 924.9 831 57.2
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.1e-256 890.6 689 65.6
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.0e-252 874.4 835 57.1
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.6e-234 816.2 950 46.8
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.5e-221 773.9 950 45.2
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.1e-208 731.1 660 58.3
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.4e-200 704.1 970 42.4
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 5.4e-200 702.2 485 69.9
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 6.4e-185 652.1 948 39.2
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.4e-184 651.0 924 40.3
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.7e-161 574.3 419 66.3
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 5.0e-145 519.6 873 34.7
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 3.9e-142 510.0 467 60.6
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 3.9e-142 510.0 948 32.4
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 9.7e-141 505.4 744 41.3
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.2e-140 502.3 403 63.8
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.6e-138 497.3 454 61.0
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.5e-136 491.5 879 34.5
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.8e-121 440.3 438 55.5
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.9e-97 360.5 261 69.3
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-91 342.4 197 82.2
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-90 338.2 418 48.6
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.5e-51 208.4 464 34.7
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-49 202.6 352 39.8
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 3.0e-49 201.4 346 39.6
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.9e-41 174.5 143 62.9
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-40 172.2 132 67.4
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.8e-36 157.9 408 32.1
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 5.3e-30 137.5 116 61.2
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-29 136.3 121 61.2
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 1.7e-28 132.5 117 63.2
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-26 125.9 118 55.9
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.6e-26 125.9 146 47.9
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.7e-23 115.9 122 54.1
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-22 112.8 71 74.6
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 4.1e-22 111.3 122 52.5
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.3e-22 110.9 71 73.2
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 7.0e-22 110.5 71 71.8
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-20 106.3 68 77.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 6.8e-17 94.0 176 34.1
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.4e-14 86.3 61 67.2
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-14 85.1 54 72.2
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 9.1e-14 83.6 46 84.8
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.0e-13 82.4 61 65.6
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.0e-12 80.1 54 68.5
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.2e-12 79.0 54 68.5
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.2e-12 79.0 180 35.6
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.1e-11 76.6 67 62.7
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-10 72.8 239 28.9
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.4e-09 69.7 67 58.2
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 6.8e-09 67.4 69 46.4
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-08 65.9 37 81.1
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 7.5e-08 63.9 39 74.4
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 6.3e-07 60.8 164 29.9
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 5.4e-06 57.8 67 43.3


User provided reference genes

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