Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 5.4e-108 394.4 213 100.0
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.0e-85 320.5 214 83.2
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.6e-78 295.8 217 79.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.6e-78 295.8 214 78.5
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-78 295.4 215 78.6
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 5.8e-78 294.7 218 78.9
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.3e-76 287.3 218 77.1
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-75 285.4 215 76.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.3e-61 240.4 173 81.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.4e-57 224.6 217 65.9
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.0e-54 216.5 213 63.8
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.9e-53 212.6 213 65.3
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.5e-52 210.3 213 63.8
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 3.2e-52 209.1 213 62.0
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.5e-52 208.4 216 63.4
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-51 207.2 213 62.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.6e-51 206.8 213 62.4
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.1e-51 204.9 185 61.6
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 5.2e-50 201.8 214 60.3
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.5e-49 200.3 197 59.4
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.3e-49 199.1 217 59.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 4.4e-49 198.7 216 62.0
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 5.7e-49 198.4 218 59.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 7.5e-49 198.0 216 62.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-48 196.8 174 69.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 2.2e-48 196.4 208 60.1
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.3e-48 194.9 215 60.0
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 8.2e-48 194.5 166 68.7
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.4e-47 193.7 165 70.3
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.8e-47 193.4 213 57.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.8e-47 193.4 214 57.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.1e-47 192.6 212 62.7
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.0e-45 187.6 213 55.9
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.3e-45 187.2 215 57.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.2e-45 186.4 219 59.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.2e-45 186.4 219 51.1
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.0e-45 185.3 213 52.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.5e-44 183.0 165 59.4
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 4.2e-44 182.2 213 54.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.6e-43 180.3 213 57.3
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 2.1e-43 179.9 204 55.9
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-43 179.9 216 50.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.6e-43 179.1 213 51.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 3.6e-43 179.1 219 53.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 8.0e-43 177.9 228 51.3
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 8.0e-43 177.9 216 53.7
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.0e-42 177.6 166 65.7
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.0e-42 177.6 225 52.9
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.8e-42 176.8 214 54.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.3e-42 176.4 216 52.3
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 3.0e-42 176.0 236 52.1
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 4.0e-42 175.6 224 49.6
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 6.8e-42 174.9 163 60.7
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 8.8e-42 174.5 167 63.5
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 8.8e-42 174.5 166 63.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 8.8e-42 174.5 166 63.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 8.8e-42 174.5 167 63.5
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.3e-40 170.6 160 65.6
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 3.7e-40 169.1 187 57.8
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.7e-40 169.1 156 64.7
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.8e-40 168.7 158 64.6
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.1e-39 167.5 186 57.5
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.8e-39 166.8 214 52.3
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 4.1e-39 165.6 215 54.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.1e-39 165.6 214 51.9
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 9.1e-39 164.5 162 61.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.2e-38 164.1 193 56.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.7e-38 162.9 201 55.7
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.5e-38 162.5 153 57.5
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.0e-37 161.0 187 57.2
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 8.5e-37 157.9 187 57.2
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.5e-36 157.1 111 69.4
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.5e-36 155.2 166 59.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.6e-35 153.7 192 55.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.1e-35 153.3 166 53.6
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 2.7e-35 152.9 212 50.5
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.6e-35 152.5 212 53.3
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.3e-34 149.8 165 56.4
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 4.0e-34 149.1 129 69.0
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 8.8e-34 147.9 149 60.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.4e-33 145.6 166 60.2
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 7.5e-33 144.8 103 69.9
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.7e-32 143.7 297 42.1
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 6.3e-32 141.7 163 54.6
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.2e-30 137.5 240 42.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.3e-29 134.0 99 66.7
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.4e-26 124.0 161 57.8
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.0e-25 120.2 94 62.8
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 4.4e-25 119.0 98 74.5
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 5.7e-25 118.6 93 78.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.7e-24 117.1 175 50.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 4.9e-24 115.5 86 67.4
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.2e-22 110.9 112 56.2
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.2e-22 110.9 144 55.6
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.2e-22 110.9 144 55.6
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.0e-21 107.8 112 54.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-21 107.1 112 53.6
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.3e-21 106.7 74 66.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 3.0e-21 106.3 105 55.2
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.9e-21 105.9 127 48.0
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 5.0e-21 105.5 112 54.5
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 6.6e-21 105.1 112 53.6
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.1e-20 104.4 89 60.7
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.1e-20 104.4 204 39.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-20 104.0 61 86.9
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 4.3e-20 102.4 89 56.2
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-19 100.9 89 58.4
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.6e-19 100.5 87 60.9
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.1e-19 100.1 89 57.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 3.6e-19 99.4 89 59.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.7e-19 99.0 90 58.9
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.0e-18 97.8 106 50.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.0e-18 97.8 89 57.3
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-18 97.4 89 53.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.8e-18 97.1 87 57.5
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.8e-18 97.1 87 57.5
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.8e-18 97.1 89 57.3
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 53.9
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.3e-18 96.7 155 41.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.1e-18 96.3 89 52.8
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 4.0e-18 95.9 85 57.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 4.0e-18 95.9 112 49.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 6.8e-18 95.1 124 47.6
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.2e-17 94.4 87 55.2
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.2e-17 94.4 89 52.8
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-17 93.6 87 55.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.0e-17 93.6 130 45.4
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 2.0e-17 93.6 103 48.5
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.0e-17 93.6 187 36.4
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 3.4e-17 92.8 87 54.0
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.4e-17 92.8 106 45.3
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 3.4e-17 92.8 89 51.7
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 5.8e-17 92.0 112 48.2
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 7.5e-17 91.7 109 45.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 7.5e-17 91.7 87 54.0
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 7.5e-17 91.7 109 45.9
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 7.5e-17 91.7 87 54.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 7.5e-17 91.7 89 51.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 7.5e-17 91.7 135 43.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.8e-17 91.3 87 52.9
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 1.7e-16 90.5 91 53.8
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 2.9e-16 89.7 87 49.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.9e-16 89.7 87 49.4
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.9e-16 89.0 86 55.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 4.9e-16 89.0 86 55.8
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 6.4e-16 88.6 87 49.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 8.3e-16 88.2 87 49.4
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.4e-15 86.7 87 48.3
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 4.1e-15 85.9 112 44.6
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 4.1e-15 85.9 89 49.4
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 5.4e-15 85.5 99 49.5
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.2e-14 84.3 90 56.7
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 2.0e-14 83.6 145 53.8
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.3e-13 80.9 148 49.3
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 2.3e-10 70.1 116 33.6
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 6.8e-10 68.6 67 56.7
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 8.9e-10 68.2 99 52.5
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 2.0e-09 67.0 99 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 5.8e-09 65.5 83 42.2
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 7.5e-09 65.1 66 60.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.1e-07 61.2 112 36.6
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.4e-07 60.8 184 38.0
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.2e-07 59.7 76 47.4
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.2e-06 57.8 63 49.2
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.1e-06 57.0 52 57.7


User provided reference genes

Program Settings