Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G095100 Prunus persica HOM05D004650 ORTHO05D005715 3.2e-154 548.5 307 100.0
MD10G1067900 Malus domestica HOM05D004650 ORTHO05D005715 3.9e-67 259.2 271 59.8
Prupe.8G089600 Prunus persica HOM05D004650 ORTHO05D005715 2.5e-66 256.5 269 60.2
MD05G1059700 Malus domestica HOM05D004650 ORTHO05D005715 3.1e-64 249.6 368 47.0
FAN20G2064 Fragaria x ananassa HOM05D004650 ORTHO05D005715 3.2e-45 186.4 364 41.2
RcHm_v2.0_Chr6g0266121 Rosa chinensis HOM05D004650 ORTHO05D005715 1.2e-44 184.5 364 40.7
FAN24G0050 Fragaria x ananassa HOM05D004650 ORTHO05D005715 8.0e-44 181.8 363 39.9
FAN15G0405 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.8e-43 180.6 361 39.6
CiPaw.06G132000 Carya illinoinensis HOM05D004650 ORTHO05D005715 3.0e-43 179.9 370 38.9
FvH4_2g09800 Fragaria vesca HOM05D004650 ORTHO05D005715 2.6e-42 176.8 350 40.3
FAN10G4111 Fragaria x ananassa HOM05D004650 ORTHO05D005715 4.1e-40 169.5 363 38.3
FvH4_7g12280 Fragaria vesca HOM05D004650 ORTHO05D005715 2.0e-39 167.2 363 38.0
FAN10G1385 Fragaria x ananassa HOM05D004650 ORTHO05D005715 2.0e-39 167.2 363 38.0
Potri.009G120900 Populus trichocarpa HOM05D004650 ORTHO05D005715 5.9e-39 165.6 364 35.2
FAN27G3342 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.3e-38 164.5 369 37.4
Cfa005063 Carpinus fangiana HOM05D004650 ORTHO05D005715 6.5e-38 162.2 386 38.1
Cpa.g.sc150.59 Carica papaya HOM05D004650 ORTHO05D005715 1.2e-36 157.9 379 34.8
Gohir.D13G029900 Gossypium hirsutum HOM05D004650 ORTHO05D005715 2.7e-36 156.8 390 34.1
QL11p045374 Quercus lobata HOM05D004650 ORTHO05D005715 4.7e-36 156.0 367 37.3
Gorai.013G034200 Gossypium raimondii HOM05D004650 ORTHO05D005715 6.1e-36 155.6 390 34.1
vmacro02074 Vaccinium macrocarpon HOM05D004650 ORTHO05D005715 6.1e-36 155.6 366 35.5
TWI75G0911 Tripterygium wilfordii HOM05D004650 ORTHO05D005715 4.0e-35 152.9 268 41.8
Haze_02320 Corylus avellana HOM05D004650 ORTHO05D005715 5.2e-35 152.5 386 37.0
Glyma.13G201700 Glycine max HOM05D004650 ORTHO05D005715 5.2e-35 152.5 353 35.4
Ciclev10027768m.g Citrus clementina HOM05D004650 ORTHO05D005715 1.5e-34 151.0 264 40.5
Rhsim11G0181000 Rhododendron simsii HOM05D004650 ORTHO05D005715 2.0e-34 150.6 359 34.5
SalBow3G4209 Salvia bowleyana HOM05D004650 ORTHO05D005715 3.4e-34 149.8 261 42.9
COL.COLO4_26001 Corchorus olitorius HOM05D004650 ORTHO05D005715 4.4e-34 149.4 265 40.0
Atru.chr5.3088 Acer truncatum HOM05D004650 ORTHO05D005715 5.7e-34 149.1 361 34.1
Medtr1g080390 Medicago truncatula HOM05D004650 ORTHO05D005715 5.7e-34 149.1 266 40.2
VMungo1127G0931 Vigna mungo HOM05D004650 ORTHO05D005715 2.2e-33 147.1 349 35.0
CSS0049841 Camellia sinensis var. sinensis HOM05D004650 ORTHO05D005715 6.3e-33 145.6 370 34.6
GSVIVG01024222001 Vitis vinifera HOM05D004650 ORTHO05D005715 6.3e-33 145.6 347 33.7
CANSAT11G1974 Cannabis sativa HOM05D004650 ORTHO05D005715 8.3e-33 145.2 348 39.4
TAR633G2180 Trochodendron aralioides HOM05D004650 ORTHO05D005715 8.3e-33 145.2 367 34.9
Cc02_g17180 Coffea canephora HOM05D004650 ORTHO05D005715 1.1e-32 144.8 343 35.0
Phvul.011G210900 Phaseolus vulgaris HOM05D004650 ORTHO05D005715 1.1e-32 144.8 351 33.3
Thecc.02G079400 Theobroma cacao HOM05D004650 ORTHO05D005715 1.8e-32 144.1 381 33.6
Manes.04G086301 Manihot esculenta HOM05D004650 ORTHO05D005715 2.4e-32 143.7 367 34.6
ClCG02G004760 Citrullus lanatus HOM05D004650 ORTHO05D005715 3.1e-32 143.3 351 34.8
MSTRG.5411 Avicennia marina HOM05D004650 ORTHO05D005715 2.0e-31 140.6 260 39.6
Lj5C193G19 Lonicera japonica HOM05D004650 ORTHO05D005715 3.5e-31 139.8 258 40.7
TPR.G3476 Trifolium pratense HOM05D004650 ORTHO05D005715 4.5e-31 139.4 359 33.7
Lj1g0020880 Lotus japonicus HOM05D004650 ORTHO05D005715 1.3e-30 137.9 344 35.8
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 1.7e-30 137.5 349 33.5
arahy.Tifrunner.gnm1.ann1.EM89X0 Arachis hypogaea HOM05D004650 ORTHO05D005715 2.2e-30 137.1 355 33.0
Lalb_Chr03g0034141 Lupinus albus HOM05D004650 ORTHO05D005715 6.5e-30 135.6 358 32.4
Psat2g040720 Pisum sativum HOM05D004650 ORTHO05D005715 1.1e-29 134.8 358 32.4
arahy.Tifrunner.gnm1.ann1.JDK4IY Arachis hypogaea HOM05D004650 ORTHO05D005715 1.5e-29 134.4 355 32.1
Nitab4.5_0009512g0020 Nicotiana tabacum HOM05D004650 ORTHO05D005715 3.2e-29 133.3 291 36.4
Lalb_Chr19g0132251 Lupinus albus HOM05D004650 ORTHO05D005715 4.2e-29 132.9 359 32.6
AUR62002225 Chenopodium quinoa HOM05D004650 ORTHO05D005715 1.2e-28 131.3 353 33.1
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 1.2e-28 131.3 353 32.6
Glyma.12G236300 Glycine max HOM05D004650 ORTHO05D005715 6.1e-28 129.0 255 38.0
Oeu050697.1 Olea europaea HOM05D004650 ORTHO05D005715 6.1e-28 129.0 344 34.3
Ca_23900_v3 Cicer arietinum L. HOM05D004650 ORTHO05D005715 8.0e-28 128.6 354 31.4
Gohir.A13G019000 Gossypium hirsutum HOM05D004650 ORTHO05D005715 1.0e-27 128.3 389 32.1
Peaxi162Scf00016g00358 Petunia axillaris HOM05D004650 ORTHO05D005715 6.8e-27 125.6 273 37.7
Sopen01g052180 Solanum pennellii HOM05D004650 ORTHO05D005715 1.2e-26 124.8 366 31.1
Nitab4.5_0003234g0030 Nicotiana tabacum HOM05D004650 ORTHO05D005715 9.8e-26 121.7 303 34.0
ECA236G4812 Erigeron canadensis HOM05D004650 ORTHO05D005715 1.3e-25 121.3 346 31.8
Nn5g29730 Nelumbo nucifera HOM05D004650 ORTHO05D005715 1.7e-25 120.9 272 37.9
Eucgr.I01295 Eucalyptus grandis HOM05D004650 ORTHO05D005715 2.2e-25 120.6 270 37.4
Sabra09G0093300 Salix brachista HOM05D004650 ORTHO05D005715 2.2e-25 120.6 251 36.3
Hund11840 Selenicereus undatus HOM05D004650 ORTHO05D005715 2.2e-25 120.6 266 39.1
AL4G10620 Arabidopsis lyrata HOM05D004650 ORTHO05D005715 1.4e-24 117.9 255 37.6
HanXRQChr16g0505091 Helianthus annuus HOM05D004650 ORTHO05D005715 1.4e-24 117.9 377 31.3
Aqoxy5G01524 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 1.8e-24 117.5 349 32.7
Carub.0004s0049 Capsella rubella HOM05D004650 ORTHO05D005715 2.4e-24 117.1 257 37.7
Lsat_1_v5_gn_7_91680 Lactuca sativa HOM05D004650 ORTHO05D005715 2.4e-24 117.1 344 29.7
Sed0015033 Sechium edule HOM05D004650 ORTHO05D005715 2.4e-24 117.1 262 36.6
AT2G21440 Arabidopsis thaliana HOM05D004650 ORTHO05D005715 7.0e-24 115.5 251 36.7
EL10Ac3g05863 Beta vulgaris HOM05D004650 ORTHO05D005715 9.2e-24 115.2 277 36.5
DCAR_023026 Daucus carota HOM05D004650 ORTHO05D005715 1.0e-22 111.7 359 31.8
AUR62015438 Chenopodium quinoa HOM05D004650 ORTHO05D005715 1.3e-22 111.3 259 39.4
MBI03_g33031_MAGBIO Magnolia biondii HOM05D004650 ORTHO05D005715 2.3e-22 110.5 391 32.2
PSO675G4364 Papaver somniferum HOM05D004650 ORTHO05D005715 5.0e-22 109.4 263 35.4
Aa31LG3G140 Aethionema arabicum HOM05D004650 ORTHO05D005715 8.6e-22 108.6 257 34.2
PSO541G1340 Papaver somniferum HOM05D004650 ORTHO05D005715 1.5e-21 107.8 350 31.7
PGR142G2793 Punica granatum HOM05D004650 ORTHO05D005715 1.9e-21 107.5 271 35.1
CARHR112350 Cardamine hirsuta HOM05D004650 ORTHO05D005715 5.2e-19 99.4 271 33.9
Aqoxy4G02770 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 6.8e-19 99.0 263 34.2
TPR.G23542 Trifolium pratense HOM05D004650 ORTHO05D005715 6.8e-19 99.0 260 33.5
Migut.G00750 Erythranthe guttata HOM05D004650 ORTHO05D005715 8.9e-19 98.6 295 33.6
C08p41530 Brassica napus HOM05D004650 ORTHO05D005715 2.0e-18 97.4 266 33.1
BolC8t51714H Brassica oleracea HOM05D004650 ORTHO05D005715 2.0e-18 97.4 266 33.1
BcaC07g41146 Brassica carinata HOM05D004650 ORTHO05D005715 4.4e-18 96.3 264 33.0
Sp4g00610 Schrenkiella parvula HOM05D004650 ORTHO05D005715 7.5e-18 95.5 264 33.0
FAN06G0733 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.7e-17 94.4 167 39.5
BraA04t17255Z Brassica rapa HOM05D004650 ORTHO05D005715 2.2e-17 94.0 253 35.6
FvH4_7g06403 Fragaria vesca HOM05D004650 ORTHO05D005715 3.7e-17 93.2 175 38.9
A04p16150 Brassica napus HOM05D004650 ORTHO05D005715 4.9e-17 92.8 347 30.0
BraA09t41211Z Brassica rapa HOM05D004650 ORTHO05D005715 6.4e-17 92.4 266 32.3
FAN03G0917 Fragaria x ananassa HOM05D004650 ORTHO05D005715 3.2e-16 90.1 163 39.3
SGA_v2.0_scaffold4257G54456 Striga asiatica HOM05D004650 ORTHO05D005715 7.0e-16 89.0 221 33.5
THA.LOC104806024 Tarenaya hassleriana HOM05D004650 ORTHO05D005715 9.2e-16 88.6 169 38.5
A09p58230 Brassica napus HOM05D004650 ORTHO05D005715 2.7e-15 87.0 260 32.7
Thhalv10023293m.g Eutrema salsugineum HOM05D004650 ORTHO05D005715 6.6e-14 82.4 157 36.9
BcaC02g08791 Brassica carinata HOM05D004650 ORTHO05D005715 1.9e-13 80.9 93 52.7
C04p50630 Brassica napus HOM05D004650 ORTHO05D005715 1.9e-13 80.9 93 52.7
Sc08g0000680 Simmondsia chinensis HOM05D004650 ORTHO05D005715 1.9e-13 80.9 312 30.8
FAN10G1169 Fragaria x ananassa HOM05D004650 ORTHO05D005715 3.3e-13 80.1 147 38.8
Gohir.A03G197200 Gossypium hirsutum HOM05D004650 ORTHO05D005715 4.3e-13 79.7 82 54.9
HPP92_025379 Vanilla planifolia HOM05D004650 ORTHO05D005715 4.3e-13 79.7 299 28.1
Pp3c11_7560 Physcomitrium patens HOM05D004650 ORTHO05D005715 9.5e-13 78.6 291 29.9
Prupe.8G089700 Prunus persica HOM05D004650 ORTHO05D005715 2.1e-12 77.4 108 50.9
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 3.1e-11 73.6 178 36.5
SHI01140 Sapria himalayana HOM05D004650 ORTHO05D005715 3.1e-11 73.6 74 52.7
SEGI_17742 Sequoiadendron giganteum HOM05D004650 ORTHO05D005715 4.0e-11 73.2 81 51.9
SEGI_24468 Sequoiadendron giganteum HOM05D004650 ORTHO05D005715 4.0e-11 73.2 81 51.9
FvH4_7g06401 Fragaria vesca HOM05D004650 ORTHO05D005715 2.0e-10 70.9 111 45.0
Gohir.D02G218566 Gossypium hirsutum HOM05D004650 ORTHO05D005715 7.5e-10 68.9 47 74.5
Zm00001eb212720 Zea mays HOM05D004650 ORTHO05D005715 1.1e-08 65.1 246 28.9
Solyc01g109990.4 Solanum lycopersicum HOM05D004650 ORTHO05D005715 3.2e-08 63.5 108 42.6
Actinidia11754 Actinidia chinensis HOM05D004650 ORTHO05D005715 7.0e-08 62.4 108 42.6
CAN.G542.9 Capsicum annuum HOM05D002907 ORTHO05D005554 9.2e-08 62.0 86 41.9
Os03g0824300 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 1.2e-07 61.6 106 41.5
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 3.5e-07 60.1 62 50.0
SMO203G0028 Selaginella moellendorffii HOM05D004650 ORTHO05D005715 3.5e-07 60.1 252 27.8
Dinv42031 Davidia involucrata HOM05D004650 ORTHO05D005715 6.0e-07 59.3 39 82.1
Mapoly0009s0044 Marchantia polymorpha HOM05D004650 ORTHO05D005715 6.0e-07 59.3 258 28.3
Cre02.g104650 Chlamydomonas reinhardtii HOM05D004650 ORTHO05D005715 1.0e-06 58.5 94 44.7
Lsat_1_v5_gn_6_14381 Lactuca sativa HOM05D004650 ORTHO05D005715 1.7e-06 57.8 126 33.3
PRCOL_00006869 Prasinoderma coloniale HOM05D004650 ORTHO05D005715 3.0e-06 57.0 78 44.9
CDE02G0935 Ceratophyllum demersum HOM05D004650 ORTHO05D005715 3.9e-06 56.6 161 33.5
Os03g0801800 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 6.6e-06 55.8 239 29.3


User provided reference genes

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