Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1968.0 1016 100.0
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1735.3 1029 88.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1669.8 1026 84.5
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1645.9 1030 82.4
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1610.5 1030 80.6
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1603.2 974 85.2
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1582.4 1030 79.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1572.0 1037 78.9
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1562.0 1030 78.6
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1548.5 1030 78.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1530.8 1042 77.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1528.5 1032 77.3
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1503.8 1031 76.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1501.1 1031 76.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1496.5 1036 76.4
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1495.3 1026 76.3
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1490.3 1033 75.4
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1490.3 1036 76.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1025 76.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1476.1 1025 75.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1037 74.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1025 73.8
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1020 74.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1454.9 1024 73.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1454.5 1001 75.4
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1452.6 1001 75.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1449.9 1031 74.2
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1449.5 1041 73.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1446.0 1022 73.6
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1442.9 1016 75.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1025 72.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1436.8 1029 74.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1031 73.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1431.0 1033 73.9
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 1040 72.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1423.7 1029 73.2
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1083 70.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1419.8 1030 73.2
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1034 73.3
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1041 72.5
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 1054 71.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1060 71.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1035 72.1
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1407.9 1044 72.2
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1033 72.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1026 73.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1026 72.5
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1025 73.5
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1026 73.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1401.7 1040 72.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1401.7 1027 73.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1401.3 1013 73.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1399.4 1001 72.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1398.6 1031 72.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 1013 73.1
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1050 71.1
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 1039 71.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1037 71.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1378.6 1072 69.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1028 70.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1035 70.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1359.4 1020 69.9
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1354.7 1015 70.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1027 69.9
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1027 69.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1004 70.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1348.2 1006 69.4
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1348.2 1021 69.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1021 69.5
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1029 69.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 1059 68.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1332.4 1018 69.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1328.2 935 73.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1029 69.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1032 68.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1036 68.1
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1036 67.9
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1011 68.7
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 1037 69.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1313.5 1009 69.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1024 67.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1001 69.6
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1028 66.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1029 67.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 1033 67.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 994 68.7
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1304.3 889 76.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1029 68.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1032 68.2
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1074 65.3
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 1026 68.3
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1013 67.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1293.5 1029 68.2
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1285.8 888 76.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1283.5 1028 68.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1281.9 1030 68.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 1027 67.9
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1278.8 1028 67.9
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 987 68.3
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1270.8 1036 66.3
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1270.0 1041 64.8
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1269.6 1029 65.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1268.8 915 74.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1036 66.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1263.4 1037 66.2
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1261.9 997 67.2
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 1006 66.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1247.6 1035 66.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1242.3 1030 65.9
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1240.3 1034 65.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1233.0 1031 63.7
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1232.6 1027 64.7
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 1015 63.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1224.2 1030 65.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1221.8 1021 65.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1219.5 1043 63.7
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1216.1 1047 64.1
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1145.6 1018 60.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1138.6 994 62.2
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1129.4 1039 61.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 930 64.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 1025 59.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1118.6 1027 62.2
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1109.4 1036 60.7
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1106.3 1034 59.1
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1094.3 1005 60.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1075.1 846 67.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 7.0e-312 1073.9 1045 57.4
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.4e-291 1006.5 989 58.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.4e-288 994.2 1046 57.4
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.3e-287 993.4 907 59.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 4.8e-271 938.3 793 65.6
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.3e-263 913.7 834 60.3
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.2e-252 876.3 988 50.7
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.2e-248 864.0 716 67.2
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.6e-248 862.8 1042 48.3
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-245 853.6 972 49.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 7.2e-243 844.7 744 64.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.6e-240 836.3 979 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 6.3e-239 831.6 991 48.1
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.1e-217 761.1 835 50.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.7e-213 746.5 814 52.5
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.7e-196 690.6 649 58.7
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.6e-196 688.7 900 44.9
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.1e-193 679.9 715 58.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.3e-171 606.3 856 47.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.6e-170 604.4 624 54.8
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-166 591.3 958 40.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.3e-155 553.5 606 53.0
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-153 547.7 668 50.4
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.1e-145 520.4 613 50.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 9.1e-137 492.3 1099 33.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.8e-124 451.4 439 56.0
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.8e-121 441.4 601 45.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.9e-119 434.1 542 49.3
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.3e-110 403.7 315 69.5
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-95 355.1 238 77.7
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.2e-80 305.8 311 55.3
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.7e-79 302.0 270 60.7
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.3e-69 269.2 964 28.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.9e-64 250.0 290 51.4
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-55 222.6 219 53.4
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 6.5e-50 203.8 909 23.8
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.4e-47 196.1 524 29.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-44 185.7 232 41.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.9e-44 183.7 152 57.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 7.7e-43 180.3 171 55.0
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 8.5e-42 176.8 151 60.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.1e-36 158.3 150 55.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.9e-33 149.1 186 48.9
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.2e-26 125.6 125 52.0
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.3e-21 109.8 109 51.4
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.3e-21 107.1 111 49.5
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.4e-20 106.3 88 59.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.8e-15 87.0 85 61.2
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 7.0e-12 77.4 66 56.1
MD05G1190300 Malus domestica HOM05D003977 ORTHO05D004536 8.9e-07 60.5 71 49.3


User provided reference genes

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