Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 0.0e+00 1642.1 925 100.0
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 0.0e+00 1366.7 927 84.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1234.6 931 71.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 0.0e+00 1225.7 931 70.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1224.2 931 70.9
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1222.6 921 71.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1201.4 931 69.7
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1199.9 931 69.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.2e-292 1010.0 877 60.2
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.3e-283 979.9 874 58.5
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.3e-272 942.6 941 57.8
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 7.5e-271 937.6 875 56.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.4e-269 931.4 941 57.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.2e-268 930.2 916 54.1
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.9e-268 927.9 941 56.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.3e-262 910.2 878 55.2
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 7.0e-261 904.4 878 54.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.1e-257 892.9 877 53.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-256 889.8 937 56.1
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.3e-256 889.4 877 54.0
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.5e-255 886.7 880 53.5
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 9.8e-255 884.0 880 53.1
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.3e-254 883.6 872 59.3
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 8.3e-254 880.9 873 54.4
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 5.4e-253 878.2 877 53.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.2e-252 877.1 869 57.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.6e-252 875.2 874 52.6
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 5.9e-252 874.8 877 52.6
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.7e-251 873.2 888 53.0
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-250 870.2 877 52.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.1e-249 866.3 876 52.4
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 5.8e-247 858.2 878 52.4
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 9.8e-247 857.4 881 58.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.9e-245 853.2 888 53.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.2e-245 852.4 878 53.1
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.2e-244 850.5 892 52.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 6.0e-244 848.2 881 51.8
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.3e-243 846.3 876 52.9
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.3e-242 842.4 876 51.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.3e-242 842.0 875 52.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 5.6e-242 841.6 872 51.1
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.1e-240 837.4 831 62.3
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.6e-239 832.8 889 55.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.4e-239 832.4 876 51.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 9.8e-239 830.9 872 50.3
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 9.8e-239 830.9 849 53.0
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.9e-237 826.6 624 67.1
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.1e-237 824.7 941 52.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.7e-236 822.8 880 51.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.6e-235 817.8 849 52.5
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 8.1e-233 811.2 908 53.0
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.2e-232 808.5 879 50.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.5e-231 807.0 836 55.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 9.9e-231 804.3 875 51.4
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.3e-230 803.9 849 52.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.2e-230 803.1 849 51.8
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.6e-228 797.0 873 49.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 4.3e-226 788.9 877 49.1
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.6e-225 786.9 903 48.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.8e-225 786.2 880 49.1
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 8.1e-225 784.6 878 50.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 7.6e-223 778.1 762 53.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.2e-222 776.5 883 54.7
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.2e-221 772.7 854 57.1
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.6e-220 768.8 881 49.5
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 6.0e-220 768.5 881 48.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 6.2e-217 758.4 871 47.9
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-216 756.5 872 47.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.4e-216 756.5 899 47.6
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.9e-205 720.3 860 46.5
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.2e-205 719.2 884 47.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 5.5e-205 718.8 909 44.9
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.6e-204 717.2 942 44.1
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.9e-203 712.6 864 51.3
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 5.6e-202 708.8 906 45.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.0e-200 702.6 865 45.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.2e-199 701.0 850 47.6
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-198 698.0 871 44.3
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 7.1e-197 691.8 1336 35.2
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.7e-195 685.3 875 47.5
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.6e-193 680.6 888 48.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-191 674.5 851 43.9
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 9.1e-184 648.3 880 41.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.6e-180 637.5 873 42.2
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.6e-180 636.3 852 43.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.1e-180 635.6 523 61.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.3e-177 625.5 855 42.8
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 6.3e-177 625.5 855 42.8
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.2e-175 621.3 757 53.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 3.8e-174 616.3 855 42.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.8e-174 616.3 855 42.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 5.0e-174 615.9 855 42.0
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.5e-174 615.5 636 53.8
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.2e-173 612.8 857 42.1
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.6e-172 609.8 866 42.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.4e-171 607.8 845 42.6
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 5.2e-171 605.9 858 41.8
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 6.3e-169 599.0 854 41.1
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.6e-167 594.3 829 40.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.2e-166 590.5 850 41.1
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.9e-166 590.1 893 43.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-164 584.7 858 42.2
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.0e-164 582.0 874 41.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.0e-163 581.6 850 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.0e-163 580.1 876 41.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 6.7e-163 578.9 596 54.5
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.8e-161 572.8 856 39.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.4e-160 571.2 310 87.7
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.7e-159 567.0 865 41.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.0e-155 553.5 867 45.9
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.0e-155 553.1 635 46.6
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.7e-150 537.7 889 41.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 8.6e-150 535.4 1373 30.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.8e-147 525.8 464 58.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.1e-144 518.5 410 64.4
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 5.2e-139 499.6 408 70.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.3e-125 453.8 336 68.2
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 4.7e-124 449.9 810 38.9
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 7.6e-114 416.0 320 64.7
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 6.0e-111 406.4 386 56.5
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.2e-104 383.6 438 50.0
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.0e-103 379.8 417 48.9
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 4.8e-100 370.2 656 36.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.8e-89 334.0 794 31.4
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.4e-89 332.8 502 40.4
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-87 328.9 363 49.3
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.3e-83 313.5 383 47.5
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.3e-77 293.9 511 38.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.3e-77 293.9 271 56.8
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.1e-75 289.3 1086 23.9
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.3e-75 287.0 282 54.6
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.9e-73 281.2 347 45.0
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.2e-72 277.7 387 44.2
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.2e-68 265.0 477 35.2
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.6e-63 247.7 192 62.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.7e-63 247.3 631 30.1
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.8e-57 227.6 376 36.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.4e-56 225.7 175 65.1
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.0e-54 219.5 177 61.6
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.4e-53 214.2 331 59.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.3e-52 212.6 465 36.3
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.3e-41 176.0 139 62.6
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 8.5e-41 173.3 157 59.9
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.0e-39 166.8 145 59.3
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 8.0e-39 166.8 419 28.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.5e-37 162.5 182 50.0
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.0e-34 152.1 126 61.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 2.3e-33 148.7 190 43.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.8e-33 147.9 184 44.6
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 5.0e-33 147.5 129 60.5
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 5.0e-33 147.5 250 36.0
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 8.6e-33 146.7 355 29.3
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 5.5e-32 144.1 210 42.9
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.2e-31 142.9 120 57.5
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.3e-30 138.7 127 50.4
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 3.4e-29 134.8 361 27.7
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 5.7e-29 134.0 133 71.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-28 132.9 89 70.8
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.3e-28 132.9 183 41.0
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-28 132.1 100 64.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.8e-27 129.0 88 64.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 2.9e-25 121.7 83 68.7
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 5.0e-25 120.9 124 50.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 6.1e-23 114.0 81 64.2
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.0e-23 113.6 81 65.4
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 9.8e-21 106.7 103 50.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-20 105.5 182 32.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.4e-19 102.1 142 39.4
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.6e-18 99.4 86 53.5
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.3e-17 95.5 115 40.0
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.5e-16 92.0 80 57.5
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.5e-16 90.1 87 49.4
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.6e-15 88.2 80 55.0
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.0e-11 73.9 67 59.7
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-09 70.1 59 49.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.7e-09 69.3 51 64.7
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 3.0e-09 68.6 148 32.4
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 7.3e-08 63.9 84 48.8
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.8e-07 62.0 84 44.0
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.7e-07 61.2 945 28.1
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 6.8e-06 57.4 35 71.4


User provided reference genes

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