Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 7.9e-73 276.9 134 100.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.8e-70 268.5 134 96.3
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 4.1e-69 264.6 134 95.5
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.0e-59 233.4 137 81.8
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.3e-56 222.2 132 80.3
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.3e-48 195.7 128 71.1
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.9e-46 188.0 134 67.9
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.5e-42 175.6 136 60.3
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.5e-42 175.6 136 60.3
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.6e-41 172.9 137 62.8
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-40 169.9 131 58.0
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.3e-40 169.1 134 59.7
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 4.0e-40 168.3 135 60.7
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-39 166.8 135 60.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.0e-39 166.0 135 58.5
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.0e-39 166.0 132 62.1
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.4e-39 164.9 134 59.0
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 4.4e-39 164.9 135 58.5
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 4.4e-39 164.9 137 57.7
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 7.5e-39 164.1 136 60.3
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.5e-39 164.1 137 58.4
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 9.8e-39 163.7 133 59.4
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 9.8e-39 163.7 137 56.2
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 9.8e-39 163.7 137 56.2
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-38 163.3 135 59.3
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.3e-38 163.3 133 57.9
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.3e-38 163.3 135 58.5
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.9e-38 162.2 135 57.0
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 2.9e-38 162.2 135 57.8
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-38 162.2 134 59.7
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.7e-38 161.8 138 55.8
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.9e-38 161.4 135 56.3
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 4.9e-38 161.4 137 57.7
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 8.3e-38 160.6 137 56.2
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.1e-37 160.2 136 55.9
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-37 160.2 137 56.9
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.4e-37 159.8 138 55.1
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.4e-37 159.8 135 57.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.4e-37 159.8 135 55.6
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.8e-37 159.5 133 55.6
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.4e-37 159.1 135 58.5
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.4e-37 159.1 132 58.3
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 3.2e-37 158.7 138 55.8
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.2e-37 158.7 135 57.8
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 5.4e-37 157.9 133 58.6
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 7.0e-37 157.5 131 57.3
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 7.0e-37 157.5 134 57.5
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.2e-36 156.8 138 55.8
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.2e-36 156.8 137 55.5
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-36 156.8 134 56.0
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-36 156.4 135 57.0
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.0e-36 156.0 134 56.7
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.7e-36 155.6 131 55.0
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.5e-36 155.2 135 56.3
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 7.8e-36 154.1 130 57.7
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.3e-35 153.3 128 57.8
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.3e-35 153.3 134 56.0
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.3e-35 153.3 132 53.8
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.7e-35 152.9 138 52.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.7e-35 152.9 132 56.8
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.3e-35 152.5 137 53.3
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-35 152.5 132 53.0
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 3.9e-35 151.8 138 55.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.9e-35 151.8 131 55.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.9e-35 151.8 134 53.7
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.6e-35 151.0 131 54.2
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.5e-34 149.8 132 52.3
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.5e-34 149.8 133 54.9
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.5e-34 149.8 127 57.5
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.5e-34 149.8 135 54.1
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 2.5e-34 149.1 135 53.3
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 3.3e-34 148.7 138 52.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.3e-34 148.3 125 57.6
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.3e-34 148.3 125 57.6
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.3e-34 148.3 125 57.6
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.6e-34 147.9 130 53.8
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 7.3e-34 147.5 135 54.8
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 9.5e-34 147.1 127 54.3
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 9.5e-34 147.1 136 53.7
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.2e-33 146.7 125 56.0
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-33 146.7 132 51.5
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.6e-33 146.4 132 54.5
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.6e-33 146.4 130 55.4
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.1e-33 146.0 127 54.3
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.1e-33 146.0 131 53.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 2.8e-33 145.6 131 52.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.8e-33 145.6 137 51.1
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.7e-33 144.8 136 51.5
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.7e-33 144.8 136 51.5
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 6.2e-33 144.4 141 49.6
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 6.2e-33 144.4 130 54.6
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-32 143.7 136 52.2
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.4e-32 143.3 127 55.9
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-32 143.3 132 52.3
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.8e-32 142.9 131 51.9
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.8e-32 142.9 131 51.9
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.8e-32 142.9 135 54.1
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 2.3e-32 142.5 131 51.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 2.3e-32 142.5 131 51.9
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 3.1e-32 142.1 134 51.5
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.1e-32 142.1 131 51.1
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.0e-32 141.7 136 53.7
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.0e-32 141.7 132 52.3
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-32 141.0 140 50.0
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-32 141.0 140 50.7
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 6.8e-32 141.0 130 52.3
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-31 140.2 132 51.5
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-31 139.8 142 48.6
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.4e-31 138.7 137 50.4
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.7e-30 136.3 133 51.9
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.2e-30 136.0 129 51.2
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.9e-30 135.6 111 56.8
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 3.7e-30 135.2 113 58.4
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 4.9e-30 134.8 137 49.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 6.4e-30 134.4 117 54.7
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.4e-30 134.4 132 48.5
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.3e-30 134.0 138 51.4
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.4e-29 133.3 134 49.3
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.4e-29 131.3 146 49.3
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.0e-29 131.0 134 52.2
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.6e-28 129.8 133 47.4
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.7e-28 129.0 143 48.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 3.5e-28 128.6 137 47.4
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.6e-28 128.3 146 48.6
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.0e-28 127.9 146 48.6
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-27 126.3 136 48.5
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-27 126.3 144 47.9
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 2.3e-27 125.9 134 49.3
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.0e-27 125.6 136 47.1
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 8.6e-27 124.0 142 47.2
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 8.6e-27 124.0 137 49.6
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.6e-27 124.0 142 47.2
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.1e-26 123.6 139 47.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.9e-26 122.9 130 48.5
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.3e-26 122.1 137 48.2
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-25 120.2 144 46.5
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.7e-25 118.2 127 48.8
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.1e-24 117.1 132 47.0
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-24 116.7 114 53.5
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 8.9e-24 114.0 135 45.2
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.3e-22 110.2 125 44.0
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.3e-22 110.2 126 44.4
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 2.4e-21 105.9 101 48.5
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.4e-21 105.9 113 50.4
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 5.4e-21 104.8 161 37.3
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.1e-20 102.8 123 40.7
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.1e-20 102.8 129 45.7
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.3e-18 95.5 95 48.4
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.3e-16 89.4 131 38.2
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.4e-15 85.5 126 38.1
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 8.4e-14 80.9 120 40.8
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.2e-13 79.0 68 54.4
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.4e-13 78.2 132 31.1
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.8e-12 74.3 42 73.8
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.1e-10 70.5 58 62.1
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.6e-10 68.2 73 42.5
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-09 65.9 61 55.7
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.8e-09 65.9 43 60.5
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.0e-08 62.0 53 54.7
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 4.0e-08 62.0 62 53.2
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.9e-07 57.4 33 69.7
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 6.4e-06 54.7 64 45.3


User provided reference genes

Program Settings