Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 7.3e-162 573.9 279 100.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.2e-110 402.9 322 66.1
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 5.5e-101 371.7 323 62.8
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 3.8e-94 349.0 279 65.9
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.9e-73 278.9 323 51.7
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.6e-70 268.1 314 45.9
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.5e-69 267.3 288 47.6
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.3e-69 265.8 314 45.5
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.3e-69 265.8 288 47.2
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.7e-68 262.3 288 48.6
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.1e-68 261.5 290 47.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.3e-67 260.0 284 46.1
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 2.3e-67 260.0 275 48.4
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.8e-67 258.5 284 45.8
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 6.8e-67 258.5 281 46.6
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.2e-66 257.7 288 46.9
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 5.8e-66 255.4 279 45.9
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.8e-66 255.4 286 46.5
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.3e-65 254.2 285 46.3
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-65 254.2 288 46.2
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.7e-65 253.8 289 45.7
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.2e-65 253.4 282 44.3
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.9e-65 253.1 288 45.5
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 8.3e-65 251.5 282 45.7
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 8.3e-65 251.5 288 44.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-64 250.8 287 45.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.9e-64 250.4 288 45.8
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-64 250.4 283 45.6
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 2.4e-64 250.0 306 46.1
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.2e-64 249.6 286 45.5
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.2e-64 249.6 320 43.8
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 5.4e-64 248.8 289 45.7
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 5.4e-64 248.8 289 45.7
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 7.1e-64 248.4 320 41.9
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 7.1e-64 248.4 288 44.1
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 9.2e-64 248.1 286 44.4
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.2e-63 247.7 281 44.8
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-63 247.7 288 45.1
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.6e-63 247.3 288 45.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.6e-63 247.3 281 45.9
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.7e-63 246.5 283 44.9
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.7e-63 246.5 293 43.3
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.7e-63 246.5 288 45.1
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.6e-63 245.7 285 46.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.0e-62 244.6 288 44.8
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 1.7e-62 243.8 282 44.7
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.3e-62 243.4 287 46.0
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 3.9e-62 242.7 291 43.3
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.1e-62 242.3 320 41.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 6.6e-62 241.9 286 43.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.6e-62 241.5 280 45.0
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.1e-61 241.1 275 45.5
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-61 241.1 321 41.7
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-61 241.1 321 41.7
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.9e-61 240.4 285 43.9
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.9e-61 240.4 288 44.1
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.3e-61 239.6 297 42.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.3e-61 239.2 281 44.5
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.6e-61 238.8 311 42.4
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 5.6e-61 238.8 287 43.9
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.5e-61 238.0 289 42.9
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 9.5e-61 238.0 315 43.2
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-60 237.7 287 44.6
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-60 237.7 287 44.6
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-60 237.7 287 44.6
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 2.8e-60 236.5 285 42.1
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.8e-60 236.5 279 45.9
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 2.8e-60 236.5 287 44.9
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 6.2e-60 235.3 315 43.5
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.8e-59 233.8 281 43.8
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.8e-59 233.8 291 44.0
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 2.4e-59 233.4 287 43.9
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.4e-59 233.4 293 41.6
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.4e-59 233.4 293 41.6
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 3.1e-59 233.0 274 42.3
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.2e-59 232.3 261 46.7
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 5.2e-59 232.3 286 42.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 6.8e-59 231.9 286 42.3
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 8.9e-59 231.5 284 43.7
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-58 231.1 313 41.5
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-58 231.1 313 41.5
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.0e-58 230.3 285 41.1
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.0e-58 230.3 315 42.5
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.6e-58 229.9 311 41.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.4e-58 229.6 284 41.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 3.4e-58 229.6 284 41.5
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 5.8e-58 228.8 311 40.8
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.8e-58 228.8 284 41.5
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.6e-58 228.4 308 42.2
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.7e-57 227.3 278 43.2
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.7e-57 227.3 288 44.1
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.7e-57 227.3 285 42.8
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.7e-57 227.3 279 44.4
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.2e-57 226.9 296 42.9
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 2.9e-57 226.5 289 41.2
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.4e-57 225.3 279 43.7
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 8.4e-57 224.9 284 42.3
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-56 224.6 279 44.4
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.4e-56 224.2 280 43.9
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.9e-56 223.8 280 43.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.9e-56 223.8 279 43.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.4e-56 223.4 267 42.3
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 2.4e-56 223.4 285 44.2
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.2e-56 222.6 280 43.6
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 4.2e-56 222.6 289 40.8
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 5.4e-56 222.2 270 42.2
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.4e-56 222.2 279 43.4
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 9.2e-56 221.5 282 40.8
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.2e-55 221.1 286 40.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 4.6e-55 219.2 287 43.6
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.3e-54 217.6 275 41.8
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.7e-54 217.2 277 41.9
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.7e-54 217.2 276 41.3
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.3e-54 216.9 268 41.8
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-53 214.5 288 41.0
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-53 214.5 279 41.9
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-53 214.5 272 40.4
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.5e-53 214.2 311 39.5
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.5e-53 213.4 234 47.9
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 7.3e-53 211.8 327 37.3
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 7.3e-53 211.8 299 40.8
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 7.3e-53 211.8 292 40.1
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.2e-52 211.1 279 42.3
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 8.1e-52 208.4 172 54.1
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 5.3e-51 205.7 182 54.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 9.0e-51 204.9 265 38.9
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-50 204.1 185 53.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 7.6e-50 201.8 269 39.0
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 9.9e-50 201.4 260 43.1
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.3e-49 201.1 182 52.7
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.7e-49 200.7 182 52.7
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.4e-48 196.8 296 35.1
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-47 194.5 301 36.5
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.6e-47 194.1 245 44.1
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.6e-47 194.1 288 39.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 3.5e-47 193.0 184 51.6
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.8e-47 191.8 291 36.1
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 8.7e-46 188.3 293 38.2
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.5e-45 186.8 308 35.7
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 9.6e-45 184.9 273 40.3
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.1e-43 181.4 168 53.6
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-42 177.6 252 40.5
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.6e-42 176.8 262 38.5
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.2e-40 169.5 307 34.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.5e-37 160.2 296 34.1
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.1e-35 154.8 317 34.7
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-35 153.3 153 51.0
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.4e-34 149.8 294 33.0
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 3.4e-34 149.8 268 33.2
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 4.5e-34 149.4 274 32.1
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 3.8e-33 146.4 179 40.8
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.5e-32 142.5 287 32.8
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.5e-32 142.5 277 32.9
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 8.7e-30 135.2 273 32.6
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.3e-27 125.9 189 38.1
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.2e-26 124.8 106 50.9
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.2e-24 116.3 171 39.2
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.2e-24 116.3 171 39.2
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 7.9e-23 112.1 130 43.8
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 4.5e-18 96.3 242 28.1
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 7.7e-18 95.5 151 35.8
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.6e-15 87.8 145 37.9
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.6e-15 86.7 177 35.0
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.1e-11 73.2 225 28.4
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.0e-10 70.9 47 66.0
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 5.9e-10 69.3 58 62.1
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 9.4e-08 62.0 69 46.4


User provided reference genes

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