Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 9.1e-248 859.8 424 100.0
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 2.5e-213 745.3 427 85.7
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.6e-196 689.5 355 95.5
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.4e-176 621.3 422 75.1
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.0e-134 482.6 417 57.1
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.8e-134 481.1 417 56.8
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.8e-132 475.3 411 57.7
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.8e-132 475.3 415 58.3
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 6.3e-132 474.9 422 56.9
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.4e-128 461.1 416 57.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.0e-126 456.1 416 54.8
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.9e-126 455.7 411 55.2
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.0e-125 453.4 384 57.6
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.6e-125 453.0 411 54.5
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.7e-125 451.1 411 56.0
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.7e-124 449.1 411 54.5
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 8.2e-124 448.0 411 53.8
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.1e-123 447.6 409 55.5
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.4e-123 446.4 386 56.7
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 3.1e-123 446.0 412 54.4
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 4.1e-123 445.7 413 53.3
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 5.3e-123 445.3 391 55.0
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.2e-122 444.1 411 53.5
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.0e-122 443.4 391 57.0
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.6e-122 443.0 413 55.4
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-121 441.0 384 55.5
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.0e-121 441.0 410 54.6
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.9e-121 439.5 413 53.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 5.0e-121 438.7 405 53.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.5e-121 438.0 378 56.6
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-120 437.6 418 52.6
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-120 437.6 418 52.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.5e-120 436.4 388 55.9
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.5e-120 435.3 386 56.2
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 5.5e-120 435.3 410 54.4
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 9.4e-120 434.5 400 53.5
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.2e-119 434.1 381 55.1
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.6e-119 433.7 393 53.9
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.1e-119 433.3 388 54.9
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.1e-119 433.3 414 52.9
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.6e-119 432.6 382 54.7
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.6e-119 432.6 410 53.4
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.0e-118 431.0 411 51.8
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.0e-118 431.0 413 53.3
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.8e-118 430.3 410 53.4
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.0e-118 429.5 410 53.9
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 4.0e-118 429.1 414 52.7
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 6.7e-118 428.3 412 53.2
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.8e-118 427.9 417 51.8
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 8.8e-118 427.9 395 53.4
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.2e-117 427.6 424 51.7
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.5e-117 427.2 417 52.0
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.0e-117 426.8 385 53.8
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.5e-117 424.9 409 51.3
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 7.5e-117 424.9 409 51.3
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.5e-117 424.9 407 51.8
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 5.3e-115 418.7 404 52.7
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 5.3e-115 418.7 388 53.1
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.0e-115 418.3 388 52.6
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 7.0e-115 418.3 388 53.1
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 7.0e-115 418.3 388 53.1
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 9.1e-115 417.9 364 55.8
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 9.1e-115 417.9 418 52.4
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 9.1e-115 417.9 387 53.5
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-114 417.5 385 53.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 2.7e-114 416.4 419 50.6
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 2.7e-114 416.4 393 51.9
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.7e-114 416.4 386 53.9
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.7e-114 414.8 408 52.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.0e-113 414.5 385 52.7
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-113 414.1 380 54.2
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 5.0e-113 412.1 393 51.4
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.0e-113 412.1 407 51.4
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 5.0e-113 412.1 413 49.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.5e-113 411.8 391 51.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 6.5e-113 411.8 415 50.6
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 8.5e-113 411.4 391 51.4
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 8.5e-113 411.4 390 52.1
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.5e-112 410.6 412 51.2
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-112 410.6 374 54.0
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.5e-112 409.8 380 53.7
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.5e-112 409.8 418 50.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.2e-112 409.1 366 53.8
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 5.5e-112 408.7 396 50.3
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.1e-111 406.8 383 54.8
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 2.1e-111 406.8 378 55.0
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.7e-111 406.4 385 52.2
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.7e-111 406.4 391 51.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 4.7e-111 405.6 389 51.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 8.0e-111 404.8 382 52.9
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 8.0e-111 404.8 429 50.1
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.0e-110 404.4 322 66.1
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 5.2e-110 402.1 389 52.2
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 2.0e-109 400.2 398 48.7
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 3.7e-108 396.0 411 49.9
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-107 394.0 384 52.6
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.8e-107 393.7 355 53.8
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 3.1e-107 392.9 404 51.2
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.6e-106 390.6 401 49.6
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.5e-106 389.0 407 50.1
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 4.5e-106 389.0 382 52.1
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.0e-105 387.9 393 50.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-105 387.9 391 51.2
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.8e-105 386.0 382 51.0
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.5e-104 383.3 393 50.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.3e-104 382.9 416 48.8
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.2e-104 382.5 406 49.0
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.2e-104 382.5 318 58.5
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.6e-103 379.4 370 51.6
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 3.6e-103 379.4 389 49.6
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 8.0e-103 378.3 392 50.8
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.8e-102 377.1 394 50.0
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-102 376.7 390 50.0
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.3e-102 376.7 390 50.0
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 3.0e-102 376.3 396 50.3
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 4.0e-102 375.9 391 48.8
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.2e-102 375.6 401 48.6
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.2e-102 375.6 396 49.5
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.2e-102 375.6 394 49.5
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-101 374.4 394 49.7
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.3e-100 370.9 421 46.1
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.3e-100 370.9 385 50.9
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.2e-100 370.2 404 48.0
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 3.7e-100 369.4 391 48.1
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-99 367.9 388 49.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.0e-99 365.2 356 53.9
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-98 364.4 376 50.3
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.8e-94 350.5 335 50.7
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.6e-93 346.7 412 46.8
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 4.4e-93 345.9 406 46.3
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 7.5e-93 345.1 383 46.0
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.4e-91 339.0 409 42.1
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.6e-90 337.4 424 44.1
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 7.8e-90 335.1 392 46.4
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.6e-89 332.0 337 48.4
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-86 324.3 404 45.0
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.0e-86 322.8 389 42.4
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.4e-83 313.5 415 43.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 4.1e-83 312.8 300 49.3
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.7e-81 307.4 387 43.2
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 6.6e-81 305.4 386 43.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 9.5e-80 301.6 389 43.2
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 4.0e-78 296.2 392 42.3
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.6e-77 293.5 290 50.3
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.8e-77 292.4 283 52.7
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.1e-75 288.1 407 37.8
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.2e-75 285.0 383 40.2
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.7e-73 280.8 366 41.5
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.2e-69 268.1 353 41.9
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-69 268.1 134 96.3
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 3.8e-68 263.1 273 48.4
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-67 260.8 227 55.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.5e-64 251.1 240 53.3
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 4.3e-64 249.6 369 37.9
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.6e-58 231.1 176 64.8
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 7.6e-53 212.2 185 55.7
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-52 211.5 289 41.2
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.7e-52 211.1 210 51.9
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-49 201.4 175 57.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.4e-40 169.1 297 36.7
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 2.4e-38 164.1 145 53.1
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 9.3e-35 152.1 190 46.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 3.0e-33 147.1 344 32.3
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.1e-33 146.4 200 39.5
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 2.9e-28 130.6 107 53.3
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.1e-24 118.6 154 45.5
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 4.3e-24 116.7 114 54.4
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-22 110.5 348 27.6
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.8e-20 103.6 377 26.3
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.1e-16 92.0 88 48.9
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.9e-13 79.7 68 55.9
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 5.7e-08 63.2 62 54.8
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.8e-06 58.2 86 40.7


User provided reference genes

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