Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 7.4e-275 949.9 470 100.0
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 2.7e-224 781.9 458 84.9
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 1.5e-222 776.2 458 84.1
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 1.1e-198 696.8 451 75.6
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 1.3e-191 673.3 424 77.6
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 5.1e-191 671.4 425 77.2
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 6.6e-191 671.0 427 77.0
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 8.7e-191 670.6 457 74.0
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.6e-189 666.4 429 75.8
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 2.1e-189 666.0 457 73.5
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.7e-189 664.8 457 73.3
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 6.2e-189 664.5 420 76.0
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.1e-188 663.7 457 73.5
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 1.8e-188 662.9 430 76.0
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 3.1e-188 662.1 430 76.5
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 3.1e-188 662.1 420 75.0
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 1.2e-187 660.2 430 75.6
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.2e-187 660.2 424 75.5
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 2.0e-187 659.4 429 75.5
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 4.4e-187 658.3 428 75.2
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 4.4e-187 658.3 431 74.7
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 5.8e-187 657.9 426 74.9
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 5.8e-187 657.9 424 75.2
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 7.6e-187 657.5 427 76.3
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 2.2e-186 656.0 425 75.3
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 4.2e-185 651.7 432 73.4
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 3.0e-183 645.6 422 74.4
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.1e-182 643.7 422 74.4
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 1.9e-182 642.9 428 72.7
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 4.3e-182 641.7 420 74.3
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 4.3e-182 641.7 422 73.7
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 5.6e-182 641.3 459 69.9
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 7.3e-182 641.0 430 72.8
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 3.1e-180 635.6 423 73.8
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 3.1e-180 635.6 423 73.8
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 1.5e-179 633.3 428 72.2
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 2.0e-179 632.9 424 72.6
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 2.6e-179 632.5 424 73.6
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 5.8e-179 631.3 428 72.0
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.4e-177 626.7 428 71.5
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 3.2e-177 625.5 427 72.1
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 1.2e-176 623.6 423 72.3
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 1.6e-176 623.2 422 71.6
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 3.5e-176 622.1 422 70.6
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 1.0e-175 620.5 427 71.2
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 1.0e-175 620.5 427 71.0
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 2.3e-175 619.4 427 71.9
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 3.9e-175 618.6 440 71.1
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 6.7e-175 617.8 427 70.7
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.5e-174 615.9 430 69.8
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.1e-173 612.8 430 69.1
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 4.8e-173 611.7 431 69.8
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 2.0e-171 606.3 413 71.9
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 3.4e-171 605.5 422 70.6
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 7.6e-171 604.4 421 71.5
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.1e-169 600.5 423 69.7
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 7.1e-169 597.8 433 69.3
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 1.2e-168 597.0 421 71.0
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 1.2e-168 597.0 450 67.3
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 1.2e-168 597.0 423 68.8
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 1.6e-168 596.7 421 71.0
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.1e-168 596.3 421 71.0
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.1e-168 596.3 422 69.0
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 2.1e-168 596.3 423 69.5
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 3.5e-168 595.5 471 63.9
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 4.6e-168 595.1 425 68.5
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 6.0e-168 594.7 443 68.4
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 6.0e-168 594.7 422 69.0
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 1.3e-167 593.6 422 69.7
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 1.3e-167 593.6 423 69.0
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 1.8e-167 593.2 421 70.5
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 2.3e-167 592.8 422 69.9
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 2.3e-167 592.8 421 69.4
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 3.0e-167 592.4 426 67.4
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 3.9e-167 592.0 423 68.8
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 2.5e-166 589.3 433 67.2
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 4.3e-166 588.6 546 58.6
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 1.3e-165 587.0 430 67.2
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 1.3e-165 587.0 430 67.2
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 1.3e-165 587.0 449 65.9
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 1.6e-165 586.6 419 69.2
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 1.6e-165 586.6 423 67.8
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.1e-164 583.9 446 65.2
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 4.0e-164 582.0 422 67.5
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 4.0e-164 582.0 433 66.5
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 2.0e-163 579.7 430 65.6
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 3.4e-163 578.9 427 67.4
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 4.5e-163 578.6 435 64.8
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 9.3e-161 570.9 433 65.8
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 6.0e-160 568.2 422 66.4
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 6.0e-160 568.2 421 65.3
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 1.0e-159 567.4 417 68.3
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 3.0e-159 565.8 420 64.0
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 1.3e-157 560.5 421 65.3
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 6.5e-154 548.1 420 63.8
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 1.1e-153 547.4 425 63.1
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 1.8e-151 540.0 421 64.8
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.3e-149 533.9 335 78.5
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 2.2e-149 533.1 421 63.2
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 2.2e-149 533.1 430 59.8
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 6.9e-148 528.1 429 61.1
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 7.9e-144 514.6 417 61.6
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.1e-137 494.2 356 67.4
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.1e-134 484.2 430 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 4.4e-134 482.3 432 55.1
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 5.5e-129 465.3 433 58.0
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.6e-128 463.8 423 53.9
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 4.7e-128 462.2 432 58.3
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 3.0e-127 459.5 431 52.9
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 1.3e-125 454.1 425 56.2
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 6.3e-125 451.8 296 73.0
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 7.7e-123 444.9 351 63.2
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.8e-116 423.7 262 77.9
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.9e-115 418.7 427 46.6
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 7.2e-113 411.8 420 53.8
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 6.8e-111 405.2 244 79.9
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.9e-89 334.0 196 80.1
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 1.3e-82 311.2 428 42.3
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 5.1e-74 282.7 235 56.2
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 2.1e-67 260.8 292 50.3
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 6.2e-64 249.2 184 67.9
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 1.1e-49 201.8 138 71.7
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 3.8e-29 133.7 90 68.9
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.9e-28 131.3 91 68.1
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 2.6e-25 120.9 88 65.9
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 6.5e-21 106.3 117 49.6
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 1.3e-13 82.0 360 25.0
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 1.7e-08 65.1 104 39.4
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 5.9e-06 56.6 41 63.4


User provided reference genes

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