Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.6e-62 242.3 160 100.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.5e-54 216.5 130 89.2
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.6e-54 215.7 125 92.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.6e-54 215.7 129 89.9
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.6e-54 215.7 129 89.9
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 7.5e-54 214.2 130 88.5
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 7.5e-54 214.2 130 88.5
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 9.9e-54 213.8 128 89.8
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.2e-53 212.6 124 90.3
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.9e-53 212.2 130 86.9
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 6.4e-53 211.1 122 91.0
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.1e-52 210.3 124 88.7
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.1e-52 210.3 127 88.2
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.4e-52 209.9 128 88.3
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.4e-52 209.9 123 89.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.4e-52 209.9 125 88.8
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.9e-52 209.5 130 87.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.4e-52 209.1 124 88.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.2e-52 208.8 127 86.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.2e-52 208.8 124 87.9
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.2e-52 208.8 123 88.6
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.2e-52 208.8 123 88.6
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 4.1e-52 208.4 159 86.2
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 4.1e-52 208.4 130 86.2
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 5.4e-52 208.0 127 88.2
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 5.4e-52 208.0 127 88.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 9.2e-52 207.2 127 87.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.6e-51 206.5 130 84.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.6e-51 206.5 130 86.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.1e-51 206.1 130 83.8
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.5e-51 205.3 124 87.1
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 4.6e-51 204.9 140 82.1
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.6e-51 204.9 132 83.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 6.0e-51 204.5 128 85.9
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.8e-51 204.1 122 89.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 7.8e-51 204.1 128 85.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 7.8e-51 204.1 124 87.1
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 7.8e-51 204.1 160 85.6
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.0e-50 203.8 128 85.9
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.0e-50 203.8 128 86.7
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.0e-50 203.8 128 84.4
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-50 203.0 122 89.3
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.7e-50 203.0 121 88.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.3e-50 202.6 122 88.5
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.3e-50 202.6 122 88.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.3e-50 202.6 124 87.1
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.9e-50 201.8 128 84.4
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.1e-50 201.4 130 83.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.6e-50 201.1 128 81.2
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 6.6e-50 201.1 130 83.1
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.6e-50 201.1 124 86.3
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 6.6e-50 201.1 157 82.8
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.5e-49 199.1 130 81.5
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.3e-49 198.7 129 81.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.3e-49 198.7 129 81.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 9.5e-49 197.2 125 83.2
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 9.5e-49 197.2 128 84.4
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.2e-48 196.8 157 75.8
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.2e-48 196.8 130 80.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.1e-48 196.1 126 80.2
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 2.1e-48 196.1 121 84.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.8e-48 195.7 124 83.1
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.8e-48 195.7 124 83.1
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 3.6e-48 195.3 130 78.5
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.6e-48 195.3 128 79.7
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.6e-48 195.3 124 83.1
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 6.2e-48 194.5 118 88.1
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 8.1e-48 194.1 157 81.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.1e-47 193.7 130 80.0
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-47 193.4 152 83.6
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.4e-47 193.4 122 81.1
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.8e-47 193.0 124 78.2
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.4e-47 192.6 127 77.2
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.4e-47 192.6 122 80.3
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.2e-47 191.4 127 76.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.2e-47 191.4 127 76.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.2e-47 191.4 127 76.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.2e-47 191.4 152 81.6
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 5.2e-47 191.4 124 84.7
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 6.8e-47 191.0 127 77.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.8e-47 191.0 125 82.4
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 6.8e-47 191.0 124 81.5
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 8.9e-47 190.7 123 80.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 8.9e-47 190.7 128 78.9
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 8.9e-47 190.7 126 79.4
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.2e-46 190.3 127 75.6
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.6e-46 189.1 122 77.9
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.6e-46 189.1 122 82.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 4.4e-46 188.3 128 78.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 5.8e-46 188.0 128 78.1
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-45 186.8 124 83.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.2e-45 186.0 161 78.3
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.9e-45 185.7 127 78.0
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.4e-45 184.5 127 77.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 8.4e-45 184.1 127 78.0
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 8.4e-45 184.1 127 78.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.1e-44 183.7 124 76.6
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.1e-44 183.7 125 76.8
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.4e-44 183.3 125 77.6
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.9e-44 183.0 130 75.4
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.9e-44 183.0 127 76.4
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.4e-44 182.6 129 76.7
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.2e-43 180.3 121 79.3
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.6e-43 179.9 124 75.0
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 4.6e-43 178.3 122 76.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 6.0e-43 177.9 124 79.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.0e-42 177.2 206 54.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 6.6e-42 174.5 129 77.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 8.7e-42 174.1 119 73.9
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-41 173.3 116 78.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.5e-41 172.6 199 55.8
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.1e-40 169.5 125 68.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.4e-39 166.8 123 66.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 3.1e-39 165.6 128 68.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 6.9e-39 164.5 102 85.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-38 163.3 121 71.1
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.5e-38 163.3 96 89.6
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 2.0e-38 162.9 102 86.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 2.6e-38 162.5 100 87.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 7.6e-38 161.0 102 83.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 8.4e-37 157.5 119 68.1
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 8.4e-37 157.5 123 66.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 3.0e-34 149.1 91 87.9
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.5e-33 146.0 125 59.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.1e-32 142.9 120 61.7
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.8e-32 142.5 124 58.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.4e-31 140.2 83 89.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.8e-31 139.8 123 56.9
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.9e-29 131.7 124 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.1e-28 130.6 123 53.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.6e-25 118.2 107 65.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.5e-22 110.2 79 73.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 7.6e-22 107.8 93 60.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 7.6e-22 107.8 93 60.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-20 104.0 96 64.6
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-19 100.5 65 80.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.8e-13 79.0 51 70.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.6e-11 73.6 70 62.9
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 2.7e-11 72.8 83 56.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 2.7e-11 72.8 83 56.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 3.9e-10 68.9 47 74.5


User provided reference genes

Program Settings