Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 0.0e+00 1298.5 655 100.0
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 0.0e+00 1177.5 656 89.9
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 0.0e+00 1100.9 657 84.9
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 0.0e+00 1087.4 657 83.6
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 0.0e+00 1084.3 657 83.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 0.0e+00 1083.6 653 83.5
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.2e-303 1043.9 630 83.5
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 9.6e-289 996.5 652 77.9
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 4.6e-283 977.6 672 74.7
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.3e-282 975.3 660 75.5
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 9.6e-281 969.9 661 75.6
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 2.6e-278 961.8 659 75.1
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 3.5e-275 951.4 663 73.5
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.3e-274 949.5 665 72.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 3.9e-274 948.0 658 73.1
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.2e-270 936.4 660 72.1
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 7.4e-265 917.1 666 70.6
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 3.1e-263 911.8 913 56.0
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 3.4e-262 908.3 655 71.1
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.3e-261 906.4 664 70.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.9e-261 905.2 664 70.0
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.9e-260 902.5 680 69.4
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.9e-260 902.5 680 69.4
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.1e-259 899.0 664 69.6
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 3.6e-259 898.3 666 69.4
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 6.7e-258 894.0 665 68.1
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 5.7e-257 891.0 661 69.1
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 1.1e-255 886.7 661 68.8
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.4e-255 886.3 661 69.3
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 3.1e-255 885.2 670 67.9
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.6e-254 882.1 670 67.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.6e-254 882.1 652 70.6
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.1e-252 876.7 666 69.8
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.8e-250 869.4 759 63.1
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 3.9e-250 868.2 680 70.9
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.5e-249 866.3 660 68.6
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 5.3e-247 857.8 634 70.5
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 7.0e-247 857.4 671 66.6
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 3.5e-246 855.1 665 65.7
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 2.9e-245 852.0 673 67.8
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 7.2e-244 847.4 657 67.0
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 9.4e-244 847.0 669 66.4
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 1.2e-243 846.7 669 66.2
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.6e-243 845.1 689 66.3
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 4.7e-243 844.7 660 66.1
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.4e-242 843.2 669 66.4
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 2.3e-242 842.4 674 66.2
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 3.9e-242 841.6 664 65.7
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 5.7e-241 837.8 677 65.7
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 7.4e-241 837.4 669 65.9
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 6.3e-240 834.3 660 65.5
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 8.2e-240 833.9 667 66.3
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.4e-239 833.2 664 65.5
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 4.1e-239 831.6 657 65.9
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 7.0e-239 830.9 661 66.6
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 4.5e-238 828.2 657 65.9
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 7.7e-238 827.4 661 64.6
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 1.0e-237 827.0 656 64.8
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 5.0e-237 824.7 658 66.1
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.6e-235 818.5 651 65.4
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 1.8e-234 816.2 671 65.3
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 4.4e-233 811.6 586 72.0
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 5.7e-233 811.2 658 63.5
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 7.5e-233 810.8 670 63.4
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 3.5e-230 802.0 658 63.7
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 3.5e-230 802.0 658 64.4
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 2.9e-229 798.9 657 62.4
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 5.0e-229 798.1 641 65.7
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.6e-227 792.0 675 62.7
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 2.0e-225 786.2 667 62.5
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 2.8e-224 782.3 671 62.0
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.8e-224 782.3 667 61.9
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.7e-222 775.8 662 61.9
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 2.5e-220 769.2 647 63.5
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.2e-219 766.9 660 61.5
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 8.9e-218 760.8 645 62.6
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 7.5e-217 757.7 655 60.9
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 2.2e-216 756.1 744 55.8
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 6.4e-216 754.6 655 60.8
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 1.4e-215 753.4 657 60.9
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 3.2e-215 752.3 657 60.7
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 9.2e-215 750.7 665 61.5
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 4.6e-214 748.4 661 59.9
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 5.9e-214 748.0 661 60.4
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 7.8e-214 747.7 662 60.1
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.9e-212 743.0 659 60.5
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 6.2e-211 738.0 657 59.2
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.0e-209 733.0 661 59.5
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 4.4e-209 731.9 657 59.4
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.9e-207 726.5 657 58.9
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.7e-205 719.9 655 58.5
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 8.6e-205 717.6 657 58.3
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 5.2e-202 708.4 718 54.7
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 9.8e-201 704.1 658 57.3
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 7.1e-199 698.0 668 55.8
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 6.4e-192 674.9 669 54.3
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 9.2e-191 671.0 628 56.2
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 1.2e-182 644.0 488 67.6
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 3.3e-172 609.4 658 50.5
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.6e-169 599.7 558 57.2
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 7.4e-164 581.6 710 46.1
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.9e-159 567.0 663 47.1
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.3e-155 554.3 524 56.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 1.2e-150 537.7 661 47.0
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 4.8e-131 472.6 539 49.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 3.7e-107 393.3 296 70.3
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 8.6e-96 355.5 376 54.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 1.9e-95 354.4 715 34.4
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 4.7e-94 349.7 538 41.8
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.2e-89 335.1 676 34.0
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 1.6e-81 308.1 645 31.5
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.8e-70 270.8 164 84.8
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.9e-58 231.5 343 43.7
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 9.3e-50 202.6 474 32.3
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 4.8e-46 190.3 136 74.3
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 4.2e-42 177.2 167 55.1
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 3.7e-38 164.1 136 64.7
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.1e-29 136.0 100 70.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.2e-28 132.5 345 31.9
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 7.2e-26 123.2 159 52.8
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.1e-21 109.4 139 43.2
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.3e-19 102.4 58 77.6
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 9.4e-18 96.3 86 54.7
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 9.4e-18 96.3 58 84.5
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 1.1e-13 82.8 70 55.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 3.1e-13 81.3 49 79.6
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.2e-10 70.9 67 56.7
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 4.0e-08 64.3 130 34.6
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.3e-06 57.0 37 75.7


User provided reference genes

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