Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 0.0e+00 1330.1 695 100.0
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 0.0e+00 1078.9 698 79.4
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 2.7e-289 998.4 695 73.2
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.2e-286 989.6 695 72.7
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 6.2e-286 987.3 695 72.5
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 5.2e-285 984.2 695 72.4
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.0e-284 982.2 695 72.2
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 2.5e-247 859.0 656 67.1
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 4.1e-245 851.7 708 62.3
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 9.3e-242 840.5 701 62.8
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 3.9e-240 835.1 706 62.3
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 3.7e-238 828.6 666 64.1
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 1.8e-237 826.2 702 62.5
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.5e-234 815.8 695 63.5
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 6.9e-229 797.7 714 57.4
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 3.8e-227 792.0 702 59.7
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 5.5e-226 788.1 709 57.8
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 4.7e-225 785.0 710 58.2
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 3.9e-224 781.9 713 58.8
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 9.7e-223 777.3 709 58.0
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.8e-222 775.8 710 58.0
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 2.4e-221 772.7 697 58.2
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 2.4e-221 772.7 711 58.6
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 2.9e-219 765.8 702 58.4
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 3.6e-217 758.8 707 57.1
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 5.2e-216 755.0 615 63.3
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.1e-215 753.8 711 57.0
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 1.5e-215 753.4 711 56.8
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 4.4e-215 751.9 712 56.0
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 7.4e-215 751.1 646 60.1
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 9.7e-215 750.7 664 58.3
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.4e-213 746.9 707 56.2
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 3.5e-212 742.3 708 56.8
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 5.9e-212 741.5 718 55.4
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.1e-210 737.3 709 55.1
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 6.1e-209 731.5 634 58.5
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 2.3e-208 729.6 709 56.0
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.3e-206 723.8 666 57.7
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 2.2e-203 713.0 789 50.3
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 3.6e-201 705.7 668 56.4
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 8.0e-201 704.5 661 56.7
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 1.5e-199 700.3 669 55.3
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 9.8e-199 697.6 712 52.7
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 2.8e-198 696.0 712 53.4
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 6.3e-198 694.9 660 55.2
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 1.1e-197 694.1 700 55.6
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.6e-196 690.3 714 52.5
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 4.5e-196 688.7 649 56.4
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 2.3e-195 686.4 647 55.8
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 5.0e-195 685.3 692 53.6
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 1.5e-194 683.7 614 59.3
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 6.8e-192 674.9 704 51.4
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 1.9e-186 656.8 705 51.5
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 7.3e-186 654.8 707 51.3
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.1e-185 653.3 702 49.9
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 1.0e-184 651.0 708 51.6
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 8.9e-184 647.9 525 60.6
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 3.4e-183 646.0 695 50.5
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 7.5e-183 644.8 633 54.2
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.1e-181 641.0 613 55.5
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 1.4e-181 640.6 708 50.3
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 7.0e-181 638.3 646 52.9
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 2.7e-180 636.3 708 49.7
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 3.5e-180 636.0 647 52.4
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 6.0e-180 635.2 710 50.8
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 7.8e-180 634.8 707 49.6
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 7.8e-180 634.8 707 49.6
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 3.9e-179 632.5 693 49.6
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 2.8e-177 626.3 730 48.8
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 1.3e-174 617.5 639 52.0
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 2.2e-174 616.7 700 49.1
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 6.0e-172 608.6 634 52.7
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.3e-171 607.4 663 50.4
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 2.5e-170 603.2 530 58.5
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 8.1e-169 598.2 474 65.2
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 4.4e-167 592.4 503 63.2
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 1.7e-166 590.5 673 49.6
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 1.4e-165 587.4 488 63.3
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.6e-164 583.9 650 49.8
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 2.7e-164 583.2 661 49.0
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.8e-160 570.5 661 48.4
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 1.9e-154 550.4 703 46.2
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 5.6e-154 548.9 642 50.2
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 7.3e-154 548.5 726 43.9
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 5.4e-149 532.3 690 43.2
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.2e-143 514.6 608 50.0
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 3.3e-138 496.5 608 48.8
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 7.4e-138 495.4 490 52.9
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 2.2e-134 483.8 375 65.9
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 4.2e-133 479.6 527 48.6
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.2e-132 478.0 310 74.8
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 1.1e-130 471.5 344 68.3
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 5.0e-126 456.1 305 72.5
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 2.2e-110 404.1 409 55.5
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 3.6e-108 396.7 664 38.7
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 7.9e-108 395.6 330 59.4
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 4.2e-101 373.2 347 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 3.7e-97 360.1 654 35.5
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 1.2e-95 355.1 329 56.2
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 1.2e-92 345.1 703 33.9
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 8.0e-84 315.8 373 47.5
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.0e-83 315.5 372 48.4
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 7.5e-74 282.7 324 47.2
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 1.2e-71 275.4 641 33.1
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 3.9e-70 270.4 316 50.6
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 3.1e-67 260.8 613 31.3
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 2.0e-66 258.1 398 43.7
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 2.3e-62 244.6 556 32.7
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 6.2e-52 209.9 147 65.3
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.4e-51 208.8 331 41.4
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 4.0e-51 207.2 174 59.2
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.1e-43 182.6 252 41.7
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 4.6e-39 167.2 188 46.8
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-36 159.1 243 41.2
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 3.1e-35 154.5 120 60.8
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 4.0e-35 154.1 123 58.5
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.8e-30 138.7 188 45.2
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.8e-27 128.6 136 42.6
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.3e-22 112.5 171 39.2
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 2.5e-21 108.2 126 46.8
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.1e-19 102.8 78 57.7
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.1e-19 102.8 77 64.9
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 9.3e-16 89.7 54 74.1
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 2.7e-15 88.2 209 31.1
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 2.7e-15 88.2 299 25.4
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 3.7e-12 77.8 117 42.7
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 5.3e-11 73.9 178 29.8
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 1.7e-09 68.9 220 27.7
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.9e-08 65.5 166 32.5


User provided reference genes

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