Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 8.1e-166 587.0 302 100.0
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 4.2e-114 415.2 316 72.2
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.5e-106 389.4 316 69.0
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 5.5e-106 388.3 312 69.2
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 1.6e-105 386.7 314 69.7
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.6e-105 385.6 316 69.3
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.8e-104 383.3 316 68.7
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.8e-104 383.3 316 68.7
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.5e-103 380.2 328 66.8
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.6e-103 379.4 323 65.6
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 5.7e-103 378.3 328 66.2
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 9.7e-103 377.5 323 65.3
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 1.7e-99 366.7 319 63.9
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 4.7e-97 358.6 312 64.1
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 1.0e-96 357.5 324 60.8
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 2.8e-94 349.4 328 60.7
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 4.5e-92 342.0 332 57.8
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.7e-91 340.1 323 60.4
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 2.2e-91 339.7 331 58.9
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.1e-90 337.4 321 60.1
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.5e-90 336.3 321 60.1
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 2.1e-89 333.2 315 60.6
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.1e-89 333.2 324 58.3
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 3.6e-89 332.4 314 61.5
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 6.1e-89 331.6 318 60.7
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 8.0e-89 331.3 324 58.0
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 8.0e-89 331.3 331 59.2
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 1.4e-88 330.5 327 58.4
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 2.3e-88 329.7 317 60.9
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.0e-88 329.3 323 57.6
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 6.8e-88 328.2 329 58.4
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.5e-87 327.0 316 58.9
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 2.6e-87 326.2 325 58.5
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 2.6e-87 326.2 318 59.7
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.7e-86 323.6 325 56.3
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 6.3e-86 321.6 314 56.7
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 1.4e-85 320.5 320 56.6
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 2.4e-85 319.7 312 56.7
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 2.4e-85 319.7 364 53.3
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 7.0e-85 318.2 322 56.5
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 7.0e-85 318.2 312 58.0
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 9.1e-85 317.8 308 56.5
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 2.7e-84 316.2 313 58.1
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 5.9e-84 315.1 312 60.3
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 5.9e-84 315.1 312 56.1
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 7.7e-84 314.7 312 59.3
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 2.9e-83 312.8 329 55.0
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 3.8e-83 312.4 312 56.1
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 3.3e-82 309.3 311 57.2
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 5.6e-82 308.5 311 56.6
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 7.2e-82 308.1 327 55.0
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.2e-81 307.4 311 55.6
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 2.1e-81 306.6 329 55.3
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 2.8e-81 306.2 312 55.1
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.7e-81 305.4 321 55.1
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 1.0e-80 304.3 310 59.7
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 1.8e-80 303.5 310 57.1
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 5.2e-80 302.0 312 55.1
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 9.8e-79 297.7 331 53.2
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 9.8e-79 297.7 309 57.0
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 2.2e-78 296.6 303 56.4
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 2.9e-78 296.2 306 55.2
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 3.7e-78 295.8 317 53.6
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 6.4e-78 295.0 320 52.8
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 3.2e-77 292.7 304 56.6
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 5.4e-77 292.0 309 56.6
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.6e-76 288.9 326 54.6
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.6e-76 288.9 326 54.6
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 7.8e-76 288.1 302 52.6
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.0e-75 287.7 303 55.8
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 1.0e-75 287.7 314 53.5
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 1.0e-75 287.7 323 54.5
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 1.7e-75 287.0 306 55.6
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 6.6e-75 285.0 304 55.6
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 9.5e-74 281.2 336 53.3
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 1.4e-72 277.3 303 54.5
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 1.8e-72 276.9 331 52.6
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 4.0e-72 275.8 304 54.3
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 4.0e-72 275.8 302 54.3
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 4.0e-72 275.8 302 54.3
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 6.8e-72 275.0 303 52.8
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 8.9e-72 274.6 303 54.5
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 8.9e-72 274.6 310 55.2
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.2e-71 274.2 300 54.0
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 5.8e-71 271.9 303 54.8
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.1e-69 267.7 296 56.1
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 3.5e-68 262.7 319 50.8
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 3.0e-67 259.6 309 50.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 6.6e-67 258.5 335 49.3
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.9e-66 256.9 330 48.8
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 4.3e-66 255.8 312 53.8
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 9.5e-66 254.6 273 53.1
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 1.8e-64 250.4 305 48.5
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 8.9e-64 248.1 326 48.8
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.5e-63 247.3 323 48.3
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 4.4e-63 245.7 319 47.6
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 5.8e-63 245.4 308 49.4
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.1e-61 241.1 154 74.7
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 2.4e-61 240.0 408 41.9
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 2.8e-57 226.5 317 45.1
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 3.6e-57 226.1 317 44.8
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 6.6e-51 205.3 302 43.4
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 4.4e-47 192.6 329 40.4
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 1.1e-42 177.9 301 40.5
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.9e-42 177.2 305 35.4
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 4.0e-40 169.5 140 61.4
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 5.3e-40 169.1 247 42.5
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 7.1e-37 158.7 318 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 8.7e-35 151.8 281 39.5
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 1.6e-33 147.5 301 36.5
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.1e-33 147.1 301 36.5
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 2.9e-30 136.7 269 41.6
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 5.5e-29 132.5 301 35.5
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 1.5e-26 124.4 142 46.5
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 1.5e-26 124.4 337 30.3
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 8.1e-25 118.6 191 36.1
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 2.0e-23 114.0 156 41.7
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 4.2e-21 106.3 130 50.0
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 3.9e-19 99.8 221 35.3
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 1.5e-18 97.8 57 68.4
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 5.7e-18 95.9 198 39.9
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 7.4e-18 95.5 57 66.7
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.6e-17 94.4 221 34.4
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 5.3e-08 62.8 41 73.2


User provided reference genes

Program Settings