Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 2563.5 1289 100.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 2261.5 1300 88.2
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 2257.6 1291 88.4
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 2078.5 1289 81.7
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2023.4 1378 75.0
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2010.0 1411 74.4
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1890.5 1293 74.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1867.0 1296 72.8
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1853.2 1294 73.3
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1852.0 1108 84.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1843.6 1297 72.0
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1827.8 1297 72.5
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1811.2 1297 69.8
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1787.7 1294 70.9
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1775.4 1321 69.6
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1773.4 1093 81.7
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1771.1 1297 70.3
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1764.6 1309 70.1
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1762.7 1294 70.9
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1754.2 1296 69.9
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1753.8 1310 68.9
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1746.9 1295 69.4
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1744.2 1296 69.4
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1743.8 1271 70.4
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1741.1 1310 68.8
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1731.8 1290 68.0
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1731.5 1294 68.4
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1730.3 1353 66.1
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1724.1 1244 72.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1722.2 1296 68.4
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1721.8 1112 79.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1715.3 1296 68.4
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1714.5 1263 68.7
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1713.7 1290 67.2
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1713.4 1294 68.2
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1711.0 1330 66.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1704.1 1151 77.0
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1703.0 1295 67.8
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1699.5 1295 67.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1699.5 1300 67.8
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1699.1 1296 67.4
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1689.9 1295 66.3
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1683.7 1292 67.0
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1682.5 1187 72.5
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1681.4 1293 67.1
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1674.8 1295 66.6
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1672.9 1295 66.5
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1664.4 1301 66.5
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1659.8 1294 65.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1654.8 1312 65.5
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1648.3 1296 65.7
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1626.7 1313 64.4
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1609.3 1299 62.5
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1609.0 1111 74.6
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1607.8 1314 64.7
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1595.5 1305 64.0
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1578.5 1300 62.8
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1577.8 1296 62.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1574.3 1297 63.8
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1567.7 1296 62.9
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1563.5 1301 61.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1547.3 1308 62.6
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1531.9 1302 62.0
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1531.2 1296 61.7
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1530.0 1294 60.4
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1529.6 1298 61.6
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1528.5 1309 60.2
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1527.3 1404 59.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1522.7 1302 61.8
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1519.6 1295 60.6
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1519.6 1302 61.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1519.2 1296 60.7
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1519.2 1296 61.1
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1516.9 1295 61.1
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1511.1 1300 60.8
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1510.7 1300 60.8
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1504.6 1297 60.7
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1503.8 1297 60.7
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1503.4 1295 62.1
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1503.0 1363 57.9
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1497.6 1295 59.3
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1315 58.9
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1296 60.9
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1492.6 1293 60.5
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1470.7 1080 69.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1457.2 1292 59.8
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1456.4 1296 57.5
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1444.1 1111 65.7
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1442.2 1165 63.8
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1429.5 1294 58.9
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1421.0 1302 58.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1416.7 1272 58.3
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1397.9 1300 57.9
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1382.1 1077 65.6
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1378.6 1294 55.1
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1352.8 1328 54.7
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1341.6 1209 58.6
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1337.0 1274 55.2
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1313.9 1296 52.5
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1289.2 1282 53.9
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1228.8 1305 51.3
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1196.4 1395 49.2
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 8.2e-292 1007.7 930 57.0
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.4e-285 984.6 840 60.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.9e-278 962.2 1355 41.0
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.1e-275 954.1 648 72.5
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.9e-273 946.0 749 66.0
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 1.2e-261 907.5 1373 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.4e-251 874.0 1189 42.4
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 4.6e-210 736.1 1295 37.0
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.0e-206 723.0 934 45.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 4.2e-203 713.0 568 64.1
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.3e-175 621.7 663 51.6
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 4.4e-160 570.1 379 77.0
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 7.5e-152 542.7 505 61.2
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.6e-149 535.0 349 78.5
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 5.9e-149 533.1 460 60.9
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.9e-131 474.9 320 73.4
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 2.3e-108 398.3 222 82.9
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 6.4e-95 353.6 1075 27.3
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.5e-93 347.8 214 78.5
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 6.0e-93 347.1 209 78.9
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-92 345.9 477 43.6
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.2e-90 337.0 411 46.7
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 6.9e-89 333.6 209 77.0
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.9e-83 315.5 294 57.1
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.2e-77 296.2 1046 26.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.1e-69 268.9 158 77.8
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.3e-63 249.6 146 75.3
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.1e-61 242.3 189 60.3
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.4e-57 229.6 713 27.1
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 5.5e-54 217.6 148 74.3
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 2.7e-53 215.3 167 64.7
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 3.9e-52 211.5 218 48.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 3.3e-51 208.4 987 23.8
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-46 193.4 143 68.5
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 2.0e-40 172.6 147 60.5
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.1e-37 162.5 111 67.6
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 6.1e-37 161.0 207 44.9
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 2.3e-36 159.1 119 67.2
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.0e-36 158.3 110 72.7
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.0e-35 156.0 122 57.4
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.1e-33 147.1 116 75.0
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.2e-31 142.5 209 39.7
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-29 136.7 113 75.2
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.1e-29 136.0 384 31.5
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.3e-26 124.0 209 36.4
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 2.7e-24 119.0 234 35.0
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.8e-23 115.2 88 64.8
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.5e-22 110.5 86 61.6
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 3.6e-21 108.6 83 68.7
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.0e-19 102.8 75 61.3
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.0e-15 89.0 201 33.3
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 8.6e-15 87.4 65 58.5
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.5e-14 86.7 57 66.7
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 9.8e-11 73.9 100 44.0
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 7.0e-09 67.8 84 45.2
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.6e-08 66.6 41 70.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 2.0e-08 66.2 45 71.1
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.7e-07 63.2 38 73.7
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 3.9e-07 62.0 60 53.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 5.0e-07 61.6 76 64.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.3e-06 58.9 73 61.6
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 3.3e-06 58.9 116 33.6


User provided reference genes

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