Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 2.2e-55 218.8 113 100.0
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 2.9e-23 112.1 124 58.1
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 3.7e-23 111.7 124 57.3
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 6.4e-23 110.9 124 57.3
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 6.4e-23 110.9 124 57.3
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 6.4e-23 110.9 124 57.3
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.1e-22 110.2 124 57.3
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.1e-22 110.2 124 57.3
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.4e-22 109.8 124 56.5
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 1.4e-22 109.8 124 57.3
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.4e-22 109.8 124 57.3
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.4e-22 109.8 124 57.3
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 1.8e-22 109.4 124 56.5
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.4e-22 109.0 124 56.5
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 2.4e-22 109.0 124 57.3
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 3.2e-22 108.6 123 56.9
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 57.3
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 3.2e-22 108.6 147 50.3
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 57.3
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 57.3
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 58.1
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 57.3
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 3.2e-22 108.6 124 57.3
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 4.1e-22 108.2 124 57.3
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 4.1e-22 108.2 124 56.5
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 4.1e-22 108.2 124 55.6
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 5.4e-22 107.8 124 56.5
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 5.4e-22 107.8 124 56.5
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 5.4e-22 107.8 124 55.6
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 5.4e-22 107.8 124 55.6
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 7.0e-22 107.5 124 56.5
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 7.0e-22 107.5 124 55.6
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 7.0e-22 107.5 124 56.5
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 7.0e-22 107.5 124 56.5
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 7.0e-22 107.5 124 56.5
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.2e-22 107.1 124 55.6
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 9.2e-22 107.1 123 56.1
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 1.2e-21 106.7 124 55.6
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 1.2e-21 106.7 124 56.5
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.2e-21 106.7 124 56.5
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.2e-21 106.7 122 55.7
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.6e-21 106.3 124 56.5
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.6e-21 106.3 124 55.6
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.6e-21 106.3 124 55.6
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.6e-21 106.3 124 55.6
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.6e-21 106.3 123 56.1
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 1.6e-21 106.3 123 56.1
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 2.0e-21 105.9 124 56.5
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.0e-21 105.9 124 54.8
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.0e-21 105.9 124 55.6
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.0e-21 105.9 124 56.5
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.7e-21 105.5 124 55.6
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.7e-21 105.5 124 55.6
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 2.7e-21 105.5 124 55.6
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.7e-21 105.5 124 55.6
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 2.7e-21 105.5 124 55.6
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 3.5e-21 105.1 124 55.6
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 3.5e-21 105.1 124 56.5
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 4.6e-21 104.8 124 54.8
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 4.6e-21 104.8 124 55.6
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 4.6e-21 104.8 124 55.6
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 5.9e-21 104.4 124 54.8
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 7.8e-21 104.0 124 54.0
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 7.8e-21 104.0 124 55.6
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 7.8e-21 104.0 124 54.0
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.0e-20 103.6 124 54.0
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.7e-20 102.8 124 54.0
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.7e-20 102.8 124 54.8
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 1.7e-20 102.8 124 54.8
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 1.7e-20 102.8 124 54.0
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.7e-20 102.8 124 54.0
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.3e-20 102.4 124 53.2
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.3e-20 102.4 124 53.2
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.3e-20 102.4 124 53.2
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 2.3e-20 102.4 124 54.0
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 2.3e-20 102.4 124 54.0
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 3.0e-20 102.1 124 53.2
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 3.9e-20 101.7 124 52.4
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 3.9e-20 101.7 123 55.3
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 3.9e-20 101.7 124 54.0
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 5.0e-20 101.3 124 54.0
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 5.0e-20 101.3 124 54.0
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 6.6e-20 100.9 124 54.0
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 6.6e-20 100.9 124 54.0
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 8.6e-20 100.5 124 53.2
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 8.6e-20 100.5 124 53.2
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.1e-19 100.1 124 53.2
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 1.1e-19 100.1 124 51.6
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.5e-19 99.8 124 53.2
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.5e-19 99.0 124 53.2
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 2.5e-19 99.0 124 53.2
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.3e-19 98.6 124 53.2
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.3e-19 98.6 124 53.2
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 4.3e-19 98.2 124 52.4
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 4.3e-19 98.2 147 48.3
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 5.6e-19 97.8 124 51.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 5.6e-19 97.8 124 52.4
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 5.6e-19 97.8 124 52.4
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 7.3e-19 97.4 124 52.4
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.2e-18 96.7 62 83.9
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.2e-18 96.7 124 51.6
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.2e-18 96.7 137 49.6
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 1.2e-18 96.7 124 51.6
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 2.8e-18 95.5 124 52.4
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.8e-18 95.5 124 50.0
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 3.6e-18 95.1 124 51.6
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 3.6e-18 95.1 62 82.3
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 4.7e-18 94.7 124 50.0
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 4.7e-18 94.7 124 51.6
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 4.7e-18 94.7 123 52.0
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 8.0e-18 94.0 62 80.6
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 6.8e-17 90.9 61 78.7
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 8.9e-17 90.5 62 77.4
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.5e-16 89.7 122 48.4
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 1.5e-16 89.7 124 50.0
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.0e-16 89.4 62 79.0
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 5.8e-16 87.8 123 48.0
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 5.8e-16 87.8 113 51.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 7.5e-16 87.4 62 72.6
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 1.3e-15 86.7 124 47.6
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.2e-15 85.9 113 50.4
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.9e-15 85.5 113 49.6
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 8.3e-15 84.0 62 69.4
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 8.3e-15 84.0 124 46.8
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 2.4e-14 82.4 123 45.5
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 3.2e-14 82.0 113 49.6
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 3.2e-14 82.0 124 45.2
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 7.0e-14 80.9 62 67.7
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 2.0e-13 79.3 62 67.7
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 2.0e-13 79.3 90 53.3
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 2.0e-13 79.3 90 53.3
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.3e-12 76.6 62 66.1
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 2.3e-12 75.9 113 46.0
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 3.9e-12 75.1 124 42.7
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 8.9e-09 63.9 52 63.5
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 8.9e-09 63.9 101 49.5
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 2.6e-08 62.4 54 63.0
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 4.4e-08 61.6 102 44.1
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.3e-07 60.1 59 55.9


User provided reference genes

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