Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G044000 Prunus persica HOM05D001588 ORTHO05D002975 6.5e-35 150.2 78 100.0
Prupe.7G122000 Prunus persica HOM05D001588 ORTHO05D002975 9.1e-21 103.2 57 89.5
MD12G1101800 Malus domestica HOM05D001588 ORTHO05D002975 1.3e-19 99.4 57 84.2
Sabra06G0093100 Salix brachista HOM05D001588 ORTHO05D002975 9.8e-15 83.2 57 73.7
Potri.006G118400 Populus trichocarpa HOM05D001588 ORTHO05D002975 2.9e-14 81.6 57 71.9
arahy.Tifrunner.gnm1.ann1.1YXT4F Arachis hypogaea HOM05D001588 ORTHO05D002975 3.2e-13 78.2 57 68.4
arahy.Tifrunner.gnm1.ann1.32P3WE Arachis hypogaea HOM05D001588 ORTHO05D002975 3.2e-13 78.2 57 68.4
QL07p041178 Quercus lobata HOM05D001588 ORTHO05D002975 3.2e-13 78.2 57 70.2
COL.COLO4_22266 Corchorus olitorius HOM05D001588 ORTHO05D002975 7.0e-13 77.0 55 70.9
Cpa.g.sc5.116 Carica papaya HOM05D001588 ORTHO05D002975 9.2e-13 76.6 57 68.4
BcaC01g04258 Brassica carinata HOM05D001588 ORTHO05D002975 1.6e-12 75.9 51 68.6
C03p43380 Brassica napus HOM05D001588 ORTHO05D002975 1.6e-12 75.9 51 68.6
BolC3t16609H Brassica oleracea HOM05D001588 ORTHO05D002975 1.6e-12 75.9 51 68.6
RcHm_v2.0_Chr3g0471501 Rosa chinensis HOM05D001588 ORTHO05D002975 1.6e-12 75.9 54 70.4
CiPaw.09G006100 Carya illinoinensis HOM05D001588 ORTHO05D002975 2.0e-12 75.5 57 66.7
THA.LOC104823221 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 2.0e-12 75.5 54 64.8
TWI77G0360 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 2.7e-12 75.1 53 69.8
Glyma.10G064000 Glycine max HOM05D001588 ORTHO05D002975 3.5e-12 74.7 57 66.7
Aa31LG3G2580 Aethionema arabicum HOM05D001588 ORTHO05D002975 4.6e-12 74.3 49 71.4
BcaB03g11575 Brassica carinata HOM05D001588 ORTHO05D002975 4.6e-12 74.3 54 66.7
Ciclev10011319m.g Citrus clementina HOM05D001588 ORTHO05D002975 4.6e-12 74.3 59 66.1
Manes.09G047609 Manihot esculenta HOM05D001588 ORTHO05D002975 4.6e-12 74.3 56 66.1
GSVIVG01033731001 Vitis vinifera HOM05D001588 ORTHO05D002975 4.6e-12 74.3 57 66.7
Atru.chr8.1676 Acer truncatum HOM05D001588 ORTHO05D002975 5.9e-12 73.9 52 67.3
AL3G21380 Arabidopsis lyrata HOM05D001588 ORTHO05D002975 5.9e-12 73.9 54 64.8
BcaB04g21231 Brassica carinata HOM05D001588 ORTHO05D002975 5.9e-12 73.9 57 63.2
A03p35710 Brassica napus HOM05D001588 ORTHO05D002975 5.9e-12 73.9 51 68.6
Lj5g0023234 Lotus japonicus HOM05D001588 ORTHO05D002975 5.9e-12 73.9 57 66.7
THA.LOC104816384 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 5.9e-12 73.9 49 71.4
BraA03t12745Z Brassica rapa HOM05D001588 ORTHO05D002975 7.8e-12 73.6 50 70.0
Thhalv10020316m.g Eutrema salsugineum HOM05D001588 ORTHO05D002975 7.8e-12 73.6 54 64.8
Manes.08G017400 Manihot esculenta HOM05D001588 ORTHO05D002975 7.8e-12 73.6 57 64.9
Dinv35843 Davidia involucrata HOM05D001588 ORTHO05D002975 1.0e-11 73.2 57 66.7
Glyma.13G148600 Glycine max HOM05D001588 ORTHO05D002975 1.0e-11 73.2 54 66.7
Gohir.A09G143000 Gossypium hirsutum HOM05D001588 ORTHO05D002975 1.0e-11 73.2 57 63.2
Thecc.05G076800 Theobroma cacao HOM05D001588 ORTHO05D002975 1.0e-11 73.2 49 71.4
TAR633G2163 Trochodendron aralioides HOM05D001588 ORTHO05D002975 1.0e-11 73.2 55 69.1
AT3G10050 Arabidopsis thaliana HOM05D001588 ORTHO05D002975 1.3e-11 72.8 54 63.0
Dinv37367 Davidia involucrata HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 64.9
Duzib106G0304 Durio zibethinus HOM05D001588 ORTHO05D002975 1.3e-11 72.8 49 69.4
FvH4_6g17350 Fragaria vesca HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
FAN05G0064 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
FAN05G2152 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
FAN05G5823 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
FAN09G2648 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
FAN14G1509 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 68.4
Gohir.D04G106300 Gossypium hirsutum HOM05D001588 ORTHO05D002975 1.3e-11 72.8 48 72.9
Gohir.D09G139200 Gossypium hirsutum HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 61.4
Gorai.006G159700 Gossypium raimondii HOM05D001588 ORTHO05D002975 1.3e-11 72.8 57 61.4
Gorai.009G410300 Gossypium raimondii HOM05D001588 ORTHO05D002975 1.3e-11 72.8 48 72.9
Hma1.2p1_1578F.1_g291790 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 1.3e-11 72.8 55 69.1
SHI54289 Sapria himalayana HOM05D001588 ORTHO05D002975 1.3e-11 72.8 51 68.6
A01p42070 Brassica napus HOM05D001588 ORTHO05D002975 1.7e-11 72.4 50 70.0
BraA01t04276Z Brassica rapa HOM05D001588 ORTHO05D002975 1.7e-11 72.4 50 70.0
Hma1.2p1_0564F.1_g179110 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 1.7e-11 72.4 58 62.1
FAN02G0909 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.3e-11 72.0 57 68.4
Rhsim04G0137800 Rhododendron simsii HOM05D001588 ORTHO05D002975 2.3e-11 72.0 55 61.8
RhsimUnG0231900 Rhododendron simsii HOM05D001588 ORTHO05D002975 2.3e-11 72.0 55 61.8
Carub.0003s0915 Capsella rubella HOM05D001588 ORTHO05D002975 2.9e-11 71.6 54 63.0
Gohir.A04G067700 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.9e-11 71.6 49 71.4
TWI53G0599 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 2.9e-11 71.6 51 64.7
TAR623G1568 Trochodendron aralioides HOM05D001588 ORTHO05D002975 2.9e-11 71.6 55 69.1
BcaC09g48118 Brassica carinata HOM05D001588 ORTHO05D002975 3.9e-11 71.2 50 68.0
BolC1t05423H Brassica oleracea HOM05D001588 ORTHO05D002975 3.9e-11 71.2 50 68.0
Oeu040559.1 Olea europaea HOM05D001588 ORTHO05D002975 5.0e-11 70.9 55 65.5
Sp3g08360 Schrenkiella parvula HOM05D001588 ORTHO05D002975 5.0e-11 70.9 54 63.0
Sed0001057 Sechium edule HOM05D001588 ORTHO05D002975 5.0e-11 70.9 55 63.6
CsaV3_6G040240 Cucumis sativus L. HOM05D001588 ORTHO05D002975 6.6e-11 70.5 53 66.0
Sed0011255 Sechium edule HOM05D001588 ORTHO05D002975 6.6e-11 70.5 57 63.2
vmacro08808 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 6.6e-11 70.5 54 59.3
vmacro11209 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 6.6e-11 70.5 57 63.2
Os03g0713000 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D002975 8.6e-11 70.1 52 65.4
vmacro21894 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 8.6e-11 70.1 53 62.3
Migut.J00482 Erythranthe guttata HOM05D001588 ORTHO05D002975 1.1e-10 69.7 57 64.9
Lj3A1008G68 Lonicera japonica HOM05D001588 ORTHO05D002975 1.1e-10 69.7 54 63.0
Medtr1g061800 Medicago truncatula HOM05D001588 ORTHO05D002975 1.1e-10 69.7 58 63.8
MELO3C024500.2 Cucumis melo HOM05D001588 ORTHO05D002975 1.5e-10 69.3 53 66.0
Actinidia31303 Actinidia chinensis HOM05D001588 ORTHO05D002975 1.9e-10 68.9 50 64.0
CARHR084550 Cardamine hirsuta HOM05D001588 ORTHO05D002975 1.9e-10 68.9 54 63.0
Lalb_Chr05g0215691 Lupinus albus HOM05D001588 ORTHO05D002975 1.9e-10 68.9 55 65.5
Lalb_Chr09g0325431 Lupinus albus HOM05D001588 ORTHO05D002975 1.9e-10 68.9 43 76.7
Phvul.007G225400 Phaseolus vulgaris HOM05D001588 ORTHO05D002975 1.9e-10 68.9 57 59.6
unitig_746.g26768 Utricularia gibba HOM05D001588 ORTHO05D002975 1.9e-10 68.9 46 71.7
Oeu041499.1 Olea europaea HOM05D001588 ORTHO05D002975 2.5e-10 68.6 52 67.3
A05p39000 Brassica napus HOM05D001588 ORTHO05D002975 3.3e-10 68.2 54 61.1
CANSAT80G1765 Cannabis sativa HOM05D001588 ORTHO05D002975 3.3e-10 68.2 50 64.0
Eucgr.A01589 Eucalyptus grandis HOM05D001588 ORTHO05D002975 3.3e-10 68.2 57 61.4
PSO339G2383 Papaver somniferum HOM05D001588 ORTHO05D002975 3.3e-10 68.2 46 71.7
Zm00001eb055020 Zea mays HOM05D001588 ORTHO05D002975 3.3e-10 68.2 61 59.0
ATR0697G150 Amborella trichopoda HOM05D001588 ORTHO05D002975 4.3e-10 67.8 63 57.1
PSO801G0202 Papaver somniferum HOM05D001588 ORTHO05D002975 4.3e-10 67.8 44 72.7
Migut.L01735 Erythranthe guttata HOM05D001588 ORTHO05D002975 5.6e-10 67.4 45 68.9
Oeu031870.1 Olea europaea HOM05D001588 ORTHO05D002975 5.6e-10 67.4 45 71.1
VMungo0720G1728 Vigna mungo HOM05D001588 ORTHO05D002975 5.6e-10 67.4 57 56.1
C05p58030 Brassica napus HOM05D001588 ORTHO05D002975 7.3e-10 67.0 50 64.0
BolC5t34459H Brassica oleracea HOM05D001588 ORTHO05D002975 7.3e-10 67.0 50 64.0
BraA05t22691Z Brassica rapa HOM05D001588 ORTHO05D002975 7.3e-10 67.0 50 64.0
ClCG04G009610 Citrullus lanatus HOM05D001588 ORTHO05D002975 9.5e-10 66.6 57 57.9
Nn6g35129 Nelumbo nucifera HOM05D001588 ORTHO05D002975 9.5e-10 66.6 57 59.6
SGA_v2.0_scaffold75G24813 Striga asiatica HOM05D001588 ORTHO05D002975 9.5e-10 66.6 45 68.9
Cfa016497 Carpinus fangiana HOM05D001588 ORTHO05D002975 1.2e-09 66.2 57 57.9
Atru.chr3.3418 Acer truncatum HOM05D001588 ORTHO05D002975 1.6e-09 65.9 58 55.2
Sc20g0005880 Simmondsia chinensis HOM05D001588 ORTHO05D002975 1.6e-09 65.9 50 64.0
Zm00001eb216240 Zea mays HOM05D001588 ORTHO05D002975 1.6e-09 65.9 43 69.8
Aqoxy2G01530 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 2.1e-09 65.5 53 56.6
MSTRG.26663 Avicennia marina HOM05D001588 ORTHO05D002975 2.1e-09 65.5 46 67.4
Psat6g077520 Pisum sativum HOM05D001588 ORTHO05D002975 2.8e-09 65.1 51 58.8
Ah.15g091270 Amaranthus hybridus HOM05D001588 ORTHO05D002975 3.6e-09 64.7 43 69.8
MSTRG.19212 Avicennia marina HOM05D001588 ORTHO05D002975 3.6e-09 64.7 53 62.3
CSS0025803 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 3.6e-09 64.7 46 67.4
Ca_11602_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 3.6e-09 64.7 52 65.4
QL12p003076 Quercus lobata HOM05D001588 ORTHO05D002975 3.6e-09 64.7 42 76.2
TPR.G21546 Trifolium pratense HOM05D001588 ORTHO05D002975 3.6e-09 64.7 51 60.8
unitig_899.g15214 Utricularia gibba HOM05D001588 ORTHO05D002975 3.6e-09 64.7 46 67.4
CiPaw.14G104800 Carya illinoinensis HOM05D001588 ORTHO05D002975 4.7e-09 64.3 56 55.4
Haze_19499 Corylus avellana HOM05D001588 ORTHO05D002975 4.7e-09 64.3 57 56.1
DCAR_020796 Daucus carota HOM05D001588 ORTHO05D002975 4.7e-09 64.3 45 66.7
ECA248G1785 Erigeron canadensis HOM05D001588 ORTHO05D002975 4.7e-09 64.3 52 57.7
Lj5g0026429 Lotus japonicus HOM05D001588 ORTHO05D002975 4.7e-09 64.3 44 70.5
Prupe.6G116600 Prunus persica HOM05D001588 ORTHO05D002975 4.7e-09 64.3 57 57.9
TPR.G30344 Trifolium pratense HOM05D001588 ORTHO05D002975 4.7e-09 64.3 51 60.8
Ca_11567_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 6.2e-09 63.9 50 60.0
Eucgr.A01588 Eucalyptus grandis HOM05D001588 ORTHO05D002975 6.2e-09 63.9 42 73.8
EL10Ac7g16729 Beta vulgaris HOM05D001588 ORTHO05D002975 8.0e-09 63.5 46 63.0
HanXRQChr13g0400241 Helianthus annuus HOM05D001588 ORTHO05D002975 8.0e-09 63.5 51 66.7
AUR62040181 Chenopodium quinoa HOM05D001588 ORTHO05D002975 1.0e-08 63.2 43 67.4
Ah.08g211180 Amaranthus hybridus HOM05D001588 ORTHO05D002975 1.4e-08 62.8 43 67.4
CSS0010158 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.4e-08 62.8 43 67.4
AUR62037925 Chenopodium quinoa HOM05D001588 ORTHO05D002975 1.4e-08 62.8 51 58.8
ECA233G3154 Erigeron canadensis HOM05D001588 ORTHO05D002975 1.4e-08 62.8 50 70.0
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 1.4e-08 62.8 43 76.7
Lj1g0002909 Lotus japonicus HOM05D001588 ORTHO05D002975 1.4e-08 62.8 52 63.5
Ca_10489_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 1.8e-08 62.4 56 57.1
Lsat_1_v5_gn_6_29060 Lactuca sativa HOM05D001588 ORTHO05D002975 1.8e-08 62.4 50 68.0
PGSC0003DMG400028273 Solanum tuberosum HOM05D001588 ORTHO05D002975 1.8e-08 62.4 45 66.7
SGA_v2.0_scaffold277G46714 Striga asiatica HOM05D001588 ORTHO05D002975 1.8e-08 62.4 55 58.2
CsaV3_6G040200 Cucumis sativus L. HOM05D001588 ORTHO05D002975 2.3e-08 62.0 41 68.3
HanXRQChr11g0350771 Helianthus annuus HOM05D001588 ORTHO05D002975 2.3e-08 62.0 53 56.6
PSO063G4077 Papaver somniferum HOM05D001588 ORTHO05D002975 2.3e-08 62.0 44 63.6
Solyc10g083760.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 2.3e-08 62.0 45 66.7
Sopen10g033220 Solanum pennellii HOM05D001588 ORTHO05D002975 2.3e-08 62.0 45 66.7
PGSC0003DMG400017604 Solanum tuberosum HOM05D001588 ORTHO05D002975 2.3e-08 62.0 53 58.5
VMungo0464G0501 Vigna mungo HOM05D001588 ORTHO05D002975 2.3e-08 62.0 58 53.4
GSVIVG01033730001 Vitis vinifera HOM05D001588 ORTHO05D002975 2.3e-08 62.0 45 62.2
AUR62040179 Chenopodium quinoa HOM05D001588 ORTHO05D002975 3.1e-08 61.6 42 66.7
SEGI_14865 Sequoiadendron giganteum HOM05D001588 ORTHO05D002975 3.1e-08 61.6 60 56.7
HPP92_017794 Vanilla planifolia HOM05D001588 ORTHO05D002975 3.1e-08 61.6 60 51.7
CDE02G4744 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 4.0e-08 61.2 43 69.8
Nitab4.5_0000132g0410 Nicotiana tabacum HOM05D001588 ORTHO05D002975 4.0e-08 61.2 48 66.7
PSO339G2017 Papaver somniferum HOM05D001588 ORTHO05D002975 4.0e-08 61.2 44 63.6
ECA248G0500 Erigeron canadensis HOM05D001588 ORTHO05D002975 5.2e-08 60.8 44 61.4
MD11G1153900 Malus domestica HOM05D001588 ORTHO05D002975 5.2e-08 60.8 46 63.0
Nitab4.5_0010518g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 5.2e-08 60.8 41 70.7
Peaxi162Scf00110g00912 Petunia axillaris HOM05D001588 ORTHO05D002975 5.2e-08 60.8 41 70.7
Lsat_1_v5_gn_1_51101 Lactuca sativa HOM05D001588 ORTHO05D002975 6.8e-08 60.5 44 65.9
HanXRQChr01g0028181 Helianthus annuus HOM05D001588 ORTHO05D002975 8.9e-08 60.1 44 63.6
RcHm_v2.0_Chr5g0055901 Rosa chinensis HOM05D001588 ORTHO05D002975 8.9e-08 60.1 53 58.5
Hund04116 Selenicereus undatus HOM05D001588 ORTHO05D002975 8.9e-08 60.1 51 56.9
Cfa010105 Carpinus fangiana HOM05D001588 ORTHO05D002975 1.2e-07 59.7 43 62.8
Pp3c9_5670 Physcomitrium patens HOM05D001588 ORTHO05D002975 1.2e-07 59.7 53 56.6
ECA248G3418 Erigeron canadensis HOM05D001588 ORTHO05D002975 1.5e-07 59.3 44 63.6
CDE02G3443 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 2.0e-07 58.9 43 67.4
ClCG04G009590 Citrullus lanatus HOM05D001588 ORTHO05D002975 2.0e-07 58.9 41 68.3
Peaxi162Scf00146g00320 Petunia axillaris HOM05D001588 ORTHO05D002975 2.6e-07 58.5 41 63.4
DCAR_017643 Daucus carota HOM05D001588 ORTHO05D002975 3.4e-07 58.2 45 60.0
FvH4_3g30040 Fragaria vesca HOM05D001588 ORTHO05D002975 3.4e-07 58.2 42 64.3
Mapoly0148s0008 Marchantia polymorpha HOM05D001588 ORTHO05D002975 3.4e-07 58.2 44 63.6
Sed0011316 Sechium edule HOM05D001588 ORTHO05D002975 3.4e-07 58.2 41 65.9
Aqoxy2G02500 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 4.4e-07 57.8 40 65.0
Solyc09g008670.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 4.4e-07 57.8 43 65.1
Sed0008569 Sechium edule HOM05D001588 ORTHO05D002975 5.8e-07 57.4 41 63.4
PGSC0003DMG400012987 Solanum tuberosum HOM05D001588 ORTHO05D002975 5.8e-07 57.4 53 58.5
Aqoxy2G02501 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 9.8e-07 56.6 40 65.0
PGR142G1536 Punica granatum HOM05D001588 ORTHO05D002975 9.8e-07 56.6 57 52.6
SEGI_19744 Sequoiadendron giganteum HOM05D001588 ORTHO05D002975 9.8e-07 56.6 61 49.2
Sopen09g003470 Solanum pennellii HOM05D001588 ORTHO05D002975 9.8e-07 56.6 43 65.1
Nitab4.5_0000132g0130 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.3e-06 56.2 41 63.4
CAN.G1830.9 Capsicum annuum HOM05D001588 ORTHO05D002975 1.7e-06 55.8 50 54.0
Nitab4.5_0006709g0070 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.7e-06 55.8 50 54.0
QL01p014100 Quercus lobata HOM05D001588 ORTHO05D002975 2.2e-06 55.5 42 59.5
SMO367G0954 Selaginella moellendorffii HOM05D001588 ORTHO05D002975 2.2e-06 55.5 42 66.7
SEGI_24436 Sequoiadendron giganteum HOM05D001588 ORTHO05D002975 2.2e-06 55.5 50 54.0
CAN.G1138.23 Capsicum annuum HOM05D001588 ORTHO05D002975 6.4e-06 53.9 40 57.5
Nitab4.5_0000963g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 6.4e-06 53.9 41 58.5
Peaxi162Scf00163g00215 Petunia axillaris HOM05D001588 ORTHO05D002975 8.3e-06 53.5 41 58.5


User provided reference genes

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