Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.8e-67 258.1 135 100.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-65 251.1 133 98.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-65 250.4 131 99.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-64 250.0 133 97.7
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-61 239.2 131 94.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-60 235.0 124 99.2
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-58 229.6 135 87.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.5e-58 228.8 130 90.8
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.6e-58 227.6 130 90.8
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 6.2e-57 224.2 131 87.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 4.0e-56 221.5 131 86.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.0e-56 221.5 131 86.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.0e-56 221.5 125 88.0
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.0e-56 221.5 142 84.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.8e-56 220.7 131 86.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 8.9e-56 220.3 121 90.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-55 219.5 131 85.5
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.5e-55 219.5 121 90.9
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.0e-55 219.2 121 90.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.0e-55 219.2 121 90.1
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.0e-55 219.2 121 90.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.4e-55 218.4 121 90.9
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.4e-55 218.4 121 90.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.4e-55 218.4 121 90.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 4.4e-55 218.0 121 90.1
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-55 218.0 142 83.8
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 5.8e-55 217.6 121 89.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.8e-55 217.6 121 88.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 7.5e-55 217.2 121 90.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 7.5e-55 217.2 121 88.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 9.8e-55 216.9 121 90.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 9.8e-55 216.9 121 89.3
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.7e-54 216.1 120 89.2
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.2e-54 215.7 121 90.1
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.7e-54 214.9 121 87.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.7e-54 214.9 121 86.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.7e-54 214.9 121 86.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 6.4e-54 214.2 121 87.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 6.4e-54 214.2 121 89.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 6.4e-54 214.2 121 89.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 6.4e-54 214.2 121 87.6
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 8.3e-54 213.8 121 87.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.1e-53 213.4 121 86.8
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.9e-53 212.6 121 87.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.9e-53 212.6 121 86.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-53 212.2 121 87.6
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.2e-53 211.8 121 87.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.4e-53 211.1 120 86.7
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.4e-53 211.1 121 87.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.4e-53 211.1 121 87.6
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.0e-53 210.7 121 86.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 7.0e-53 210.7 121 87.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 9.2e-53 210.3 121 86.0
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.2e-53 210.3 122 85.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 9.2e-53 210.3 121 86.8
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 9.2e-53 210.3 121 88.4
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.2e-52 209.9 121 85.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.6e-52 209.5 121 86.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.0e-52 209.1 121 86.0
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.0e-52 209.1 121 86.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-52 209.1 148 75.7
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.7e-52 208.8 121 87.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-52 208.8 121 86.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.5e-52 208.4 148 75.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.5e-52 208.4 148 75.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-52 208.4 121 85.1
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-52 208.4 121 85.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 7.8e-52 207.2 121 87.6
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.0e-51 206.8 121 86.0
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-51 206.5 124 83.1
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.7e-51 206.1 121 85.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.7e-51 206.1 120 87.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.3e-51 205.7 121 83.5
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.0e-51 205.3 122 84.4
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.0e-51 205.3 121 86.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.9e-51 204.9 121 84.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.9e-51 204.9 121 85.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.6e-51 204.1 122 83.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 6.6e-51 204.1 121 85.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 8.6e-51 203.8 121 84.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 8.6e-51 203.8 121 84.3
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.5e-50 203.0 121 83.5
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.5e-50 203.0 121 85.1
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.5e-50 203.0 121 82.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.9e-50 202.6 121 86.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.3e-50 201.4 121 84.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 4.3e-50 201.4 138 75.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.6e-50 201.1 121 83.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.1e-49 199.1 134 76.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.1e-49 199.1 126 81.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 2.8e-49 198.7 121 81.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.2e-49 197.6 144 73.6
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.4e-48 196.4 159 67.3
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.0e-48 194.9 121 80.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.0e-48 194.9 121 80.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.0e-48 194.9 121 80.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.0e-48 194.9 121 80.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.0e-48 194.9 121 80.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.2e-48 194.5 121 79.3
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.9e-48 193.7 121 79.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 8.9e-48 193.7 121 80.2
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 8.9e-48 193.7 121 80.2
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-47 193.4 105 90.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.5e-47 193.0 121 78.5
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.6e-47 192.2 121 79.3
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.6e-47 192.2 104 90.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.4e-47 191.8 121 78.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.4e-47 191.8 122 80.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 4.4e-47 191.4 104 91.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.4e-47 191.4 104 90.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 4.4e-47 191.4 125 76.8
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.8e-47 191.0 104 90.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.5e-47 190.7 121 78.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.5e-47 190.7 121 78.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-46 189.5 121 78.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-46 189.1 121 77.7
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.9e-46 188.7 145 69.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.9e-46 188.7 104 89.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.4e-46 187.6 121 78.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 6.4e-46 187.6 121 78.5
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 6.4e-46 187.6 121 74.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 8.3e-46 187.2 125 74.4
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.1e-45 186.8 126 74.6
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.9e-45 186.0 100 91.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 4.1e-45 184.9 121 72.7
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.4e-45 184.5 103 87.4
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.6e-44 181.4 97 91.8
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.6e-44 181.4 103 87.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.0e-44 181.0 122 72.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-43 179.5 94 94.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.5e-42 175.6 117 75.2
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.3e-42 175.3 104 82.7
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.3e-42 174.9 121 71.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 5.6e-42 174.5 104 82.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-42 174.1 106 83.0
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.2e-41 171.0 124 64.5
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.1e-40 170.2 104 80.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-40 168.7 112 75.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.9e-40 167.2 104 84.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.2e-39 166.8 192 51.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.9e-38 162.2 122 71.3
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.9e-35 151.8 79 91.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 8.6e-35 150.6 81 85.2
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-34 150.2 97 77.3
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 4.3e-34 148.3 79 87.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-33 146.7 83 88.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.9e-30 135.6 112 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.3e-29 130.6 102 63.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.9e-27 125.2 93 68.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.1e-26 123.6 73 86.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.3e-26 121.7 82 72.0
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-25 118.6 103 62.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-22 108.6 74 70.3
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.1e-19 98.2 64 73.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-17 92.0 65 72.3
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.6e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.6e-15 85.9 49 87.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 3.4e-15 85.5 45 84.4
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.9e-14 82.4 112 50.0
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.2e-13 78.6 114 41.2
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.1e-12 76.3 116 37.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.9e-11 72.0 106 39.6


User provided reference genes

Program Settings