Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 8.6e-257 889.8 447 100.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 3.8e-212 741.5 452 81.4
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 5.7e-208 727.6 447 77.6
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.3e-207 726.5 447 82.1
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 4.8e-207 724.5 452 81.2
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.4e-206 723.0 453 80.1
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.1e-206 721.5 450 80.2
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 5.5e-203 711.1 448 78.3
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.0e-201 706.8 524 70.4
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.4e-201 706.4 447 80.1
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.7e-199 699.5 454 77.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 8.2e-199 697.2 450 73.6
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.5e-197 693.0 442 76.0
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 2.0e-197 692.6 442 76.0
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.7e-196 689.5 454 73.8
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.2e-196 689.1 442 75.6
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.9e-196 688.7 442 75.6
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 6.5e-196 687.6 472 73.3
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.1e-195 686.8 451 77.8
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-194 682.9 458 75.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 8.0e-194 680.6 452 73.0
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.0e-193 680.2 451 77.4
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 2.0e-192 676.0 449 74.4
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.1e-190 670.2 450 74.2
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.4e-190 669.1 457 73.3
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.2e-189 666.8 451 73.2
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 4.5e-189 664.8 465 72.5
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.3e-188 663.3 451 74.1
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 2.5e-187 659.1 443 72.7
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.2e-186 656.8 447 71.6
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.2e-186 656.8 455 71.2
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.4e-185 653.3 491 69.5
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.2e-184 650.2 551 63.2
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 2.6e-184 649.0 456 68.9
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 3.3e-184 648.7 464 69.0
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 6.3e-183 644.4 450 71.8
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 8.2e-183 644.0 495 64.8
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 8.2e-183 644.0 448 72.5
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.8e-182 642.9 455 70.1
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 2.4e-182 642.5 441 72.8
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 7.0e-182 641.0 449 72.6
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 9.1e-182 640.6 451 72.9
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 1.6e-181 639.8 442 72.9
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.0e-181 639.4 441 73.2
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 5.9e-181 637.9 449 71.9
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 1.3e-180 636.7 441 73.0
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.9e-180 635.6 451 71.8
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 6.5e-180 634.4 448 71.7
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 8.5e-180 634.0 471 67.5
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.1e-179 633.6 448 71.7
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.2e-178 630.2 452 71.5
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 8.8e-177 624.0 452 68.6
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 8.3e-175 617.5 468 68.8
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-174 617.1 444 67.8
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.8e-174 616.3 452 67.0
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 3.1e-174 615.5 452 67.0
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 3.1e-174 615.5 452 67.0
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 4.1e-174 615.1 452 67.3
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 9.1e-174 614.0 485 64.5
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 2.0e-173 612.8 429 73.2
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 2.3e-172 609.4 446 67.5
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 3.8e-172 608.6 416 72.1
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.1e-171 607.1 486 63.8
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 3.3e-171 605.5 446 68.4
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 2.2e-167 592.8 426 69.0
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 2.4e-166 589.3 523 57.6
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.2e-165 587.0 446 62.8
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.8e-161 573.2 446 64.3
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.0e-160 569.7 446 60.8
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.7e-159 565.5 432 66.7
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.1e-158 563.9 398 73.4
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.9e-158 563.1 446 59.6
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 9.5e-155 550.8 463 60.3
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.1e-154 549.7 444 63.5
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 8.3e-151 537.7 426 63.6
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 1.8e-145 520.0 486 59.3
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 3.4e-144 515.8 400 65.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.7e-143 512.3 447 58.6
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 3.2e-142 509.2 359 72.7
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.9e-139 500.0 339 71.7
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.5e-136 490.3 471 55.2
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.2e-127 459.9 406 59.6
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.9e-127 458.8 460 54.3
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 8.7e-124 448.0 484 47.7
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 6.0e-117 425.2 449 53.9
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 3.0e-116 422.9 389 59.9
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 9.9e-112 407.9 305 66.9
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 2.9e-111 406.4 406 56.9
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.0e-109 398.7 333 63.7
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.9e-107 393.7 459 43.1
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.1e-106 390.2 453 44.6
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.8e-106 389.8 453 44.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.2e-103 380.2 210 84.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 4.9e-103 379.0 215 84.7
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 4.2e-102 375.9 245 78.4
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 3.1e-97 359.8 227 77.5
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.5e-96 357.5 201 86.1
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-93 347.4 235 73.6
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.0e-92 343.2 276 62.0
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 1.1e-91 341.3 201 78.6
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 9.7e-91 338.2 262 64.9
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 6.9e-89 332.0 174 88.5
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.7e-87 327.4 200 75.5
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.1e-81 308.1 236 64.8
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 2.5e-78 297.0 263 60.5
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.1e-75 288.1 228 57.9
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.0e-75 287.3 168 76.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 5.9e-72 275.8 151 85.4
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 5.5e-70 269.2 176 75.0
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 7.2e-70 268.9 234 56.0
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 4.8e-66 256.1 138 87.0
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 4.5e-64 249.6 208 61.1
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 8.5e-63 245.4 201 60.2
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.4e-59 233.0 182 66.5
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 8.3e-58 228.8 190 62.6
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.8e-57 227.6 209 54.5
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 5.9e-48 196.1 338 35.5
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.0e-40 171.0 87 85.1
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.0e-39 168.7 298 38.9
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.3e-39 167.5 97 83.5
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 3.9e-31 140.2 278 30.6
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.6e-31 139.0 85 76.5
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-28 132.1 241 39.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.1e-28 130.6 70 81.4
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 6.2e-21 106.3 226 32.3
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 3.5e-16 90.5 53 75.5
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.3e-15 87.8 88 50.0
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 5.1e-15 86.7 58 72.4
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 1.8e-12 78.2 353 27.2
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 3.9e-07 60.5 50 58.0


User provided reference genes

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