Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.6e-135 486.1 251 100.0
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.4e-118 429.9 250 89.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.3e-116 423.3 250 88.4
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.2e-116 422.5 247 87.4
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 3.7e-116 421.8 247 87.4
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.7e-116 421.8 247 87.4
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 9.2e-115 417.2 247 86.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-114 416.8 247 86.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-114 416.4 247 86.2
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 4.4e-101 371.7 238 78.2
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.8e-100 368.6 251 74.1
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.9e-99 366.3 249 75.1
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 3.2e-99 365.5 250 74.4
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.7e-97 359.8 252 73.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.9e-97 358.6 251 73.3
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 6.6e-97 357.8 248 73.4
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 6.6e-97 357.8 227 78.4
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 6.6e-97 357.8 227 78.4
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.1e-96 357.1 237 78.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.9e-96 356.3 246 74.4
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 7.3e-96 354.4 250 72.8
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.6e-95 353.2 239 76.2
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.1e-95 352.8 244 74.6
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.1e-95 352.8 243 75.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 3.6e-95 352.1 250 74.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 6.2e-95 351.3 229 78.2
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 6.2e-95 351.3 262 71.4
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.4e-94 350.1 238 76.1
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.4e-94 350.1 227 78.0
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 4.0e-94 348.6 245 74.7
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.3e-94 348.2 220 80.5
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.3e-94 348.2 227 79.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 6.9e-94 347.8 250 72.0
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 6.9e-94 347.8 250 72.0
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.6e-93 345.9 220 79.5
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.7e-92 343.2 251 73.3
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.2e-92 342.8 218 78.0
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 2.9e-92 342.4 248 73.4
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 3.8e-92 342.0 250 71.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.1e-91 340.5 218 77.5
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.1e-91 340.5 227 77.5
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.4e-91 340.1 248 71.8
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.9e-91 339.7 236 75.4
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.2e-91 339.0 243 70.8
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.2e-91 338.6 227 77.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 5.4e-91 338.2 246 70.3
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.4e-91 338.2 246 70.3
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 5.4e-91 338.2 247 70.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 7.1e-91 337.8 238 73.5
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 9.3e-91 337.4 246 69.9
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.7e-90 335.9 210 81.0
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.7e-90 335.9 210 80.5
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.7e-90 335.9 236 73.3
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.7e-90 335.9 246 69.5
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.3e-89 333.6 251 70.5
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.7e-89 333.2 229 74.7
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.7e-89 333.2 232 75.4
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.3e-89 332.8 246 69.1
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.9e-89 332.0 252 68.7
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.1e-89 331.6 277 63.9
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.9e-88 329.7 228 71.5
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 3.3e-88 328.9 237 71.3
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 5.6e-88 328.2 250 68.0
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 5.6e-88 328.2 253 71.1
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 9.6e-88 327.4 230 74.8
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 9.6e-88 327.4 220 74.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 9.6e-88 327.4 239 73.6
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 9.6e-88 327.4 209 78.5
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 9.6e-88 327.4 209 80.4
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.3e-87 327.0 222 76.6
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.3e-87 327.0 227 72.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 2.1e-87 326.2 222 76.1
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.8e-87 325.9 222 77.0
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.6e-87 325.5 230 74.3
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 3.6e-87 325.5 209 78.0
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 4.8e-87 325.1 239 73.2
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 8.1e-87 324.3 209 78.5
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.1e-86 323.9 233 70.8
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.1e-86 323.9 222 76.6
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.4e-86 323.6 210 78.6
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 3.1e-86 322.4 227 73.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.5e-85 320.1 230 70.0
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.0e-85 319.7 220 75.9
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 2.6e-85 319.3 222 75.7
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.4e-85 318.9 236 71.6
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.4e-85 318.9 230 72.6
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 7.6e-85 317.8 219 72.6
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.7e-84 316.6 216 73.1
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.7e-84 316.6 205 79.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.8e-84 315.5 221 71.9
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.8e-84 315.5 231 72.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.8e-84 315.5 275 63.3
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 4.9e-84 315.1 219 72.6
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 8.4e-84 314.3 205 78.5
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 8.4e-84 314.3 242 68.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 7.1e-83 311.2 214 74.3
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.2e-82 310.5 214 74.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 3.5e-82 308.9 217 71.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 6.7e-81 304.7 189 79.4
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 6.7e-81 304.7 240 67.1
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.1e-80 303.9 231 70.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 6.2e-79 298.1 320 54.4
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 8.1e-79 297.7 204 76.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 6.5e-76 288.1 165 86.1
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 2.8e-71 272.7 210 68.1
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.5e-69 266.9 210 68.1
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.0e-69 266.5 210 68.1
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 9.3e-67 257.7 214 61.7
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 7.4e-64 248.1 220 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.3e-63 247.3 197 61.4
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 5.5e-59 231.9 205 57.1
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 7.2e-59 231.5 142 78.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 7.2e-51 204.9 159 62.9
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 4.7e-50 202.2 202 51.0
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 8.8e-49 198.0 201 51.7
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.1e-48 197.6 193 53.9
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.5e-45 186.0 178 50.6
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.2e-44 183.3 143 69.9
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 3.2e-43 179.5 221 45.2
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-41 173.7 117 77.8
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 5.3e-38 162.2 158 60.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.0e-25 121.3 143 41.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.7e-23 112.8 65 86.2
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 2.9e-20 103.2 101 60.4
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.8e-17 94.0 77 64.9
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.4e-16 89.7 53 83.0
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 8.3e-07 58.5 142 23.2
CARHR049100 Cardamine hirsuta HOM05D002462 ORTHO05D002893 4.1e-06 56.2 129 24.8
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 4.1e-06 56.2 126 26.2
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 9.2e-06 55.1 135 26.7
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 9.2e-06 55.1 135 25.2


User provided reference genes

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