Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.0e-61 240.0 132 100.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 9.7e-56 221.1 131 90.8
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.8e-54 216.9 131 88.5
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 9.1e-54 214.5 131 88.5
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.0e-53 213.4 130 88.5
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.5e-53 212.2 131 88.5
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.0e-52 211.1 130 87.7
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.9e-52 209.5 131 86.3
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.9e-52 209.5 130 86.9
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 5.0e-52 208.8 131 86.3
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 6.5e-52 208.4 130 87.7
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 6.5e-52 208.4 130 88.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.1e-51 207.6 131 87.0
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.1e-51 207.6 130 88.5
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.1e-51 207.6 131 85.5
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.9e-51 206.8 131 85.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 9.4e-51 204.5 131 84.7
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 9.4e-51 204.5 131 84.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.2e-50 204.1 130 85.4
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-50 203.0 131 84.7
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.7e-50 203.0 131 84.0
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.7e-50 203.0 131 84.7
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 3.6e-50 202.6 131 84.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 6.1e-50 201.8 131 84.0
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 6.1e-50 201.8 131 84.0
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 7.9e-50 201.4 131 81.7
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 7.9e-50 201.4 131 84.0
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.0e-49 201.1 125 87.2
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.0e-49 201.1 132 85.6
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.4e-49 200.7 132 84.8
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.4e-49 200.7 130 83.1
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.4e-49 200.7 131 82.4
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.3e-49 199.9 131 83.2
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 3.9e-49 199.1 130 80.8
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.9e-49 199.1 131 79.4
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 5.1e-49 198.7 133 81.2
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 5.1e-49 198.7 130 82.3
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 6.7e-49 198.4 131 82.4
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.5e-48 197.2 130 81.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.5e-48 197.2 131 82.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.0e-48 196.8 130 81.5
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 3.3e-48 196.1 131 80.9
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.3e-48 196.1 126 84.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 4.4e-48 195.7 130 82.3
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 7.4e-48 194.9 117 90.6
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 9.7e-48 194.5 130 83.1
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.2e-47 193.4 130 82.3
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.8e-47 192.2 131 80.2
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 4.8e-47 192.2 123 85.4
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.1e-46 191.0 131 78.6
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.4e-46 189.9 143 74.8
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.1e-46 189.5 131 80.2
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 4.1e-46 189.1 135 78.5
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 7.0e-46 188.3 130 80.8
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.0e-46 188.3 131 69.5
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 9.1e-46 188.0 130 80.8
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.0e-45 186.8 131 77.1
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 5.9e-45 185.3 125 81.6
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 5.9e-45 185.3 149 73.2
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-44 184.1 130 78.5
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.7e-44 183.7 125 80.0
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.8e-44 182.6 132 75.8
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 5.0e-44 182.2 131 80.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.5e-43 179.9 125 79.2
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 3.6e-42 176.0 135 73.3
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-42 176.0 163 56.4
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 8.0e-42 174.9 131 76.3
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.0e-41 174.5 131 71.8
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.4e-41 174.1 131 73.3
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.8e-41 173.7 131 74.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 5.2e-41 172.2 131 74.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 5.2e-41 172.2 131 77.9
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 8.8e-41 171.4 123 76.4
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.5e-40 170.6 142 57.0
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.0e-40 170.2 125 74.4
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.6e-40 169.9 131 73.3
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.6e-40 169.9 131 73.3
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 4.4e-40 169.1 131 74.0
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 4.4e-40 169.1 132 72.7
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.2e-39 166.8 131 72.5
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 4.8e-39 165.6 131 72.5
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 8.2e-39 164.9 90 83.3
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.1e-38 164.5 131 71.8
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.4e-38 164.1 131 71.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.8e-38 163.7 131 71.0
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.4e-38 163.3 131 71.0
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 4.1e-38 162.5 131 71.0
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 4.1e-38 162.5 90 82.2
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 5.3e-38 162.2 124 77.4
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 9.1e-38 161.4 130 73.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 2.7e-37 159.8 114 75.4
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 2.7e-37 159.8 187 46.0
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-37 159.1 127 73.2
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 8.5e-36 154.8 135 62.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 7.2e-35 151.8 129 67.4
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.1e-34 150.2 92 75.0
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.0e-33 147.9 131 64.1
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.4e-33 147.5 131 62.6
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.8e-33 147.1 114 73.7
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 4.0e-33 146.0 90 74.4
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 8.8e-33 144.8 133 58.6
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 7.5e-32 141.7 128 62.5
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-31 140.2 136 61.0
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-30 137.9 132 61.4
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-30 137.9 118 70.3
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.2e-29 134.4 133 62.4
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-29 134.0 94 67.0
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.0e-29 133.7 121 71.1
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 5.9e-29 132.1 92 67.4
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 7.7e-29 131.7 128 52.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.3e-28 131.0 131 61.1
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.2e-28 130.2 144 57.6
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.9e-28 129.8 90 67.8
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.9e-28 129.8 142 58.5
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 5.0e-28 129.0 90 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 6.5e-28 128.6 131 59.5
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 3.2e-27 126.3 131 55.7
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 5.5e-27 125.6 94 67.0
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 2.7e-26 123.2 119 65.5
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 3.6e-26 122.9 95 67.4
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 4.7e-26 122.5 130 60.0
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.3e-25 120.2 89 60.7
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.2e-24 117.9 91 65.9
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-24 117.5 123 60.2
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 5.7e-24 115.5 131 48.1
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 2.8e-23 113.2 115 59.1
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.7e-23 112.8 71 73.2
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 8.3e-23 111.7 107 66.4
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.8e-22 110.5 131 47.3
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 4.1e-22 109.4 117 61.5
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-22 108.6 80 83.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.3e-19 99.8 90 54.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.6e-19 99.0 115 46.1
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-18 97.1 118 47.5
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.7e-18 95.9 107 49.5
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 6.1e-18 95.5 113 45.1
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.0e-17 94.7 105 50.5
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-17 94.0 113 47.8
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-16 89.7 133 40.6
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 5.7e-16 89.0 45 84.4
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 2.2e-15 87.0 46 82.6
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 2.9e-15 86.7 45 82.2
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.8e-14 84.0 62 59.7
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.4e-14 82.4 63 55.6
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-13 80.5 62 56.5
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.0e-13 80.5 62 56.5
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.0e-13 80.5 116 38.8
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.0e-12 78.2 45 73.3
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.0e-12 76.6 124 50.0
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-11 74.3 93 43.0
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.3e-11 73.2 45 71.1
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.1e-10 70.5 59 55.9
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 8.0e-10 68.6 132 46.2
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 8.0e-10 68.6 50 64.0
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-09 67.4 32 84.4
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-09 67.4 32 84.4
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.2e-09 65.9 77 51.9
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 5.2e-09 65.9 53 58.5
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.2e-08 64.7 31 83.9
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.5e-08 62.0 60 50.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.2e-07 60.5 38 63.2
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-07 60.1 70 51.4


User provided reference genes

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