Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.4e-83 311.2 156 100.0
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-68 263.5 165 83.0
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 4.0e-68 261.5 165 82.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 4.0e-68 261.5 165 82.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.4e-65 252.3 165 78.8
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 3.2e-65 251.9 165 78.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.2e-65 251.9 165 78.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.2e-65 251.9 165 78.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.2e-65 251.9 165 78.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-64 250.0 165 77.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.5e-64 248.4 165 77.0
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.7e-63 246.1 165 76.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.7e-63 246.1 165 76.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.0e-63 245.4 165 77.0
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.9e-63 245.0 165 73.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.9e-63 245.0 165 73.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.7e-63 243.8 165 74.5
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.7e-63 243.8 165 74.5
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.1e-62 243.4 165 74.5
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.9e-62 242.7 165 75.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.9e-62 242.7 165 75.8
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.5e-62 242.3 165 75.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.3e-62 241.9 165 73.3
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 7.3e-62 240.7 165 75.2
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 7.3e-62 240.7 165 73.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 7.3e-62 240.7 165 75.2
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.1e-61 239.2 165 75.2
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.1e-61 239.2 165 73.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 4.8e-61 238.0 165 73.3
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 8.1e-61 237.3 165 75.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.4e-60 236.5 165 73.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.8e-60 236.1 165 73.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.4e-60 235.7 165 72.7
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.4e-60 235.7 165 74.5
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.1e-60 235.3 165 73.3
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 4.0e-60 235.0 165 73.3
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.0e-60 235.0 165 73.3
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.0e-60 235.0 165 73.9
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.9e-60 234.2 165 73.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 9.0e-60 233.8 165 70.9
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 9.0e-60 233.8 165 74.5
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 73.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 73.3
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 72.7
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 72.7
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 72.7
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 72.7
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 72.7
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 73.3
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-59 233.4 165 73.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 72.7
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 72.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 72.7
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 72.7
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 72.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.5e-59 233.0 165 73.9
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.6e-59 232.3 167 71.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-59 232.3 165 72.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-59 232.3 167 71.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-59 232.3 165 72.1
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.6e-59 232.3 165 72.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.6e-59 230.7 165 72.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 9.9e-59 230.3 165 70.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-58 229.9 165 71.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-58 229.9 165 72.7
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.3e-58 229.9 165 71.5
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 2.2e-58 229.2 165 70.9
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.8e-58 228.4 165 72.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.8e-58 228.4 165 72.1
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 3.8e-58 228.4 165 70.3
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 8.4e-58 227.3 165 69.7
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 8.4e-58 227.3 165 69.7
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.1e-57 226.9 165 70.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-57 226.5 165 71.5
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-57 226.5 165 71.5
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-57 226.5 165 71.5
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-57 226.5 165 71.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.9e-57 226.1 165 71.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.9e-57 226.1 165 69.7
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.4e-57 225.7 165 69.1
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 3.2e-57 225.3 165 69.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.2e-57 225.3 165 69.7
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.2e-57 225.3 165 69.7
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.2e-57 224.9 165 70.9
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.3e-57 223.8 165 69.1
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.3e-57 223.8 154 72.1
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.1e-56 222.6 165 69.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 6.0e-56 221.1 165 69.7
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 6.0e-56 221.1 165 70.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 6.0e-56 221.1 165 70.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 6.0e-56 221.1 165 69.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 6.0e-56 221.1 165 68.5
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.9e-56 220.7 165 70.3
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 7.9e-56 220.7 165 70.3
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.0e-55 220.3 165 69.1
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.1e-55 218.0 165 70.3
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 8.7e-55 217.2 165 69.1
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 8.7e-55 217.2 165 69.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 8.7e-55 217.2 165 69.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 8.7e-55 217.2 165 69.1
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.5e-54 216.5 165 68.5
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.5e-54 216.5 165 69.1
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.5e-54 215.7 165 69.7
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.3e-54 215.3 162 70.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 3.3e-54 215.3 165 69.7
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 3.3e-54 215.3 165 67.9
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 4.3e-54 214.9 165 67.9
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 4.3e-54 214.9 165 65.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.6e-54 214.5 151 74.2
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.4e-54 214.2 165 67.9
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.6e-53 213.0 160 68.8
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 8.1e-53 210.7 154 68.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.8e-52 209.5 165 64.8
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 4.0e-52 208.4 166 66.9
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 6.9e-52 207.6 168 64.9
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.9e-52 207.6 168 64.9
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 6.9e-52 207.6 168 65.5
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 6.9e-52 207.6 168 65.5
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.0e-52 207.2 165 65.5
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.5e-51 206.5 165 64.8
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.4e-51 205.3 166 67.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.7e-50 203.0 166 66.3
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.2e-50 202.6 147 70.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.8e-50 201.8 166 67.5
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 3.8e-50 201.8 166 66.3
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 8.4e-50 200.7 171 63.2
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 8.4e-50 200.7 166 66.3
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.4e-49 199.1 166 65.7
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.2e-49 198.7 161 62.1
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.2e-49 198.7 161 62.1
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 3.2e-49 198.7 166 65.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 6.0e-48 194.5 151 68.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.3e-47 193.4 165 63.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.3e-47 193.4 157 61.8
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 5.6e-46 188.0 164 56.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.3e-45 186.8 161 56.5
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 6.2e-45 184.5 165 54.5
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.4e-44 183.3 165 57.0
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-44 182.2 165 61.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 7.6e-43 177.6 152 53.9
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 7.6e-43 177.6 168 56.0
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 2.9e-42 175.6 168 55.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 5.5e-41 171.4 165 61.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.1e-41 171.0 165 61.2
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 8.7e-39 164.1 146 57.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 5.3e-36 154.8 121 65.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-33 147.1 159 53.5
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.5e-33 146.0 162 53.1
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.5e-30 136.0 127 55.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.8e-29 132.5 152 44.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.4e-27 125.6 132 56.1
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 4.2e-25 118.6 92 65.2
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 6.7e-23 111.3 83 67.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.6e-22 109.4 82 70.7
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.7e-21 105.5 100 61.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 7.0e-20 101.3 62 82.3
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 6.5e-18 94.7 66 72.7
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 3.3e-14 82.4 64 67.2
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.7e-13 80.1 49 77.6


User provided reference genes

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