Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 5.7e-39 163.7 78 100.0
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.9e-12 73.9 73 50.7
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-11 72.8 35 97.1
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-11 72.8 35 97.1
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.9e-11 71.6 35 94.3
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.9e-11 71.2 35 94.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 5.0e-11 70.9 35 94.3
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 6.6e-11 70.5 35 91.4
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 6.6e-11 70.5 35 91.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 94.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 8.6e-11 70.1 35 91.4
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.1e-10 69.7 35 91.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.5e-10 69.3 35 88.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.5e-10 69.3 34 91.2
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.9e-10 68.9 35 88.6
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.5e-10 68.6 35 88.6
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.5e-10 68.6 35 91.4
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.5e-10 68.6 35 85.7
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 3.3e-10 68.2 35 91.4
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.3e-10 68.2 35 88.6
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.3e-10 68.2 35 91.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.3e-10 68.2 35 91.4
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 88.6
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 88.6
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 4.3e-10 67.8 35 91.4
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.6e-10 67.4 35 85.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.6e-10 67.4 35 85.7
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 5.6e-10 67.4 35 88.6
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.6e-10 67.4 35 88.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.3e-10 67.0 32 93.8
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 7.3e-10 67.0 32 93.8
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.3e-10 67.0 35 88.6
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 7.3e-10 67.0 35 88.6
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 85.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 85.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 88.6
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 88.6
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 88.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 85.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.5e-10 66.6 35 85.7
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.2e-09 66.2 35 85.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.2e-09 66.2 35 82.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.2e-09 66.2 35 88.6
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.2e-09 66.2 35 85.7
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.6e-09 65.9 34 85.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.6e-09 65.9 35 85.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.1e-09 65.5 35 88.6
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-09 65.5 35 88.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.1e-09 65.5 35 85.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.8e-09 65.1 35 82.9
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 3.6e-09 64.7 35 85.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 6.2e-09 63.9 35 80.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.0e-09 63.5 33 84.8
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-08 62.0 35 85.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.3e-08 62.0 35 82.9
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.1e-08 61.6 35 80.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 5.2e-08 60.8 35 74.3
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 5.2e-08 60.8 35 74.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 8.9e-08 60.1 35 80.0
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 8.9e-08 60.1 35 80.0
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.2e-07 59.7 35 80.0
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.2e-07 59.7 35 80.0
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.5e-07 59.3 35 74.3
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.5e-07 59.3 34 79.4
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.0e-07 58.9 35 71.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.6e-07 58.5 35 77.1
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.6e-07 58.5 35 71.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.6e-07 58.5 34 70.6
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.6e-07 58.5 35 77.1
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.6e-07 58.5 35 77.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.4e-07 58.2 35 77.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 4.4e-07 57.8 35 68.6
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 4.4e-07 57.8 35 77.1
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 7.5e-07 57.0 35 74.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 9.8e-07 56.6 35 74.3
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.8e-07 56.6 35 65.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 2.2e-06 55.5 34 70.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.2e-06 55.5 34 70.6
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 3.7e-06 54.7 27 85.2
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.4e-06 53.9 35 71.4
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.3e-06 53.5 35 71.4


User provided reference genes

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