Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 1.6e-58 229.2 116 100.0
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 2.3e-52 208.8 116 92.2
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 7.4e-51 203.8 116 89.7
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 1.8e-44 182.6 116 80.2
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.1e-43 179.9 116 77.6
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 2.0e-43 179.1 116 76.7
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 2.5e-43 178.7 116 79.3
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.3e-43 178.3 115 79.1
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.3e-43 178.3 115 79.1
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 5.7e-43 177.6 115 77.4
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 7.4e-43 177.2 116 77.6
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 9.7e-43 176.8 116 77.6
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 1.3e-42 176.4 116 78.4
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.7e-42 176.0 116 78.4
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.7e-42 176.0 116 78.4
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 2.2e-42 175.6 116 76.7
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 2.2e-42 175.6 116 78.4
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 2.8e-42 175.3 116 77.6
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 2.8e-42 175.3 116 78.4
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.7e-42 174.9 116 77.6
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 4.8e-42 174.5 116 75.9
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 4.8e-42 174.5 116 75.9
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 4.8e-42 174.5 116 75.9
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 6.3e-42 174.1 116 77.6
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 8.2e-42 173.7 116 74.1
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 1.1e-41 173.3 116 77.6
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 1.4e-41 172.9 116 75.0
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 1.4e-41 172.9 116 75.0
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.4e-41 172.2 116 76.7
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 2.4e-41 172.2 116 76.7
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 3.1e-41 171.8 116 74.1
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 3.1e-41 171.8 116 75.9
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 3.1e-41 171.8 116 73.3
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 4.1e-41 171.4 116 76.7
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 4.1e-41 171.4 116 74.1
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 4.1e-41 171.4 116 72.4
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 4.1e-41 171.4 116 75.9
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 5.3e-41 171.0 116 74.1
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.3e-41 171.0 115 76.5
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 5.3e-41 171.0 113 76.1
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 75.9
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 73.3
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 73.3
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 73.3
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 73.3
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 6.9e-41 170.6 116 75.0
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 9.1e-41 170.2 116 75.9
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 9.1e-41 170.2 116 73.3
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 1.2e-40 169.9 116 73.3
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 1.2e-40 169.9 116 71.6
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 1.5e-40 169.5 116 75.9
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 1.5e-40 169.5 116 73.3
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 2.6e-40 168.7 115 73.0
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 2.6e-40 168.7 116 75.0
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 3.4e-40 168.3 116 75.9
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 3.4e-40 168.3 116 74.1
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 4.5e-40 167.9 116 71.6
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.5e-40 167.9 116 74.1
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 4.5e-40 167.9 116 71.6
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 4.5e-40 167.9 115 74.8
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 4.5e-40 167.9 116 72.4
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 5.9e-40 167.5 116 75.9
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 5.9e-40 167.5 116 73.3
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 5.9e-40 167.5 116 75.0
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 7.7e-40 167.2 116 73.3
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 7.7e-40 167.2 116 71.6
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 7.7e-40 167.2 114 74.6
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 1.0e-39 166.8 116 73.3
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.0e-39 166.8 116 73.3
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 1.0e-39 166.8 116 70.7
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.0e-39 166.8 116 75.0
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 1.3e-39 166.4 116 70.7
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 1.3e-39 166.4 116 72.4
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 1.7e-39 166.0 116 71.6
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 2.2e-39 165.6 116 74.1
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 2.2e-39 165.6 116 71.6
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 2.2e-39 165.6 116 72.4
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 2.2e-39 165.6 116 73.3
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 2.9e-39 165.2 116 74.1
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 2.9e-39 165.2 116 73.3
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 2.9e-39 165.2 116 73.3
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 2.9e-39 165.2 116 73.3
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 3.8e-39 164.9 116 73.3
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 3.8e-39 164.9 116 73.3
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 3.8e-39 164.9 116 71.6
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 3.8e-39 164.9 116 73.3
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.8e-39 164.9 116 71.6
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 5.0e-39 164.5 116 75.0
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 5.0e-39 164.5 116 73.3
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 5.0e-39 164.5 116 72.4
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 5.0e-39 164.5 114 70.2
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 5.0e-39 164.5 116 75.9
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 5.0e-39 164.5 115 73.0
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 6.5e-39 164.1 116 73.3
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 8.5e-39 163.7 116 69.8
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 8.5e-39 163.7 116 69.8
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 8.5e-39 163.7 116 72.4
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 1.1e-38 163.3 114 75.4
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 1.4e-38 162.9 116 73.3
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 1.9e-38 162.5 111 73.0
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.5e-38 162.2 116 69.8
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 3.2e-38 161.8 116 73.3
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 3.2e-38 161.8 116 71.6
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 4.2e-38 161.4 116 73.3
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 4.2e-38 161.4 116 69.8
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 4.2e-38 161.4 115 67.8
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 5.5e-38 161.0 116 69.8
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 5.5e-38 161.0 108 75.0
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 5.5e-38 161.0 115 71.3
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 7.2e-38 160.6 117 71.8
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 7.2e-38 160.6 116 70.7
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 9.4e-38 160.2 116 72.4
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 9.4e-38 160.2 116 70.7
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 2.7e-37 158.7 116 69.0
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 2.7e-37 158.7 116 69.0
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 4.7e-37 157.9 116 69.0
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 4.7e-37 157.9 116 69.0
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 6.1e-37 157.5 108 74.1
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 7.9e-37 157.1 116 69.0
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 7.9e-37 157.1 116 68.1
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.0e-36 156.8 116 69.0
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.0e-36 156.8 116 68.1
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 1.4e-36 156.4 119 68.1
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 67.2
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 67.2
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 68.1
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 67.2
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 67.2
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 68.1
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.8e-36 156.0 116 67.2
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 2.3e-36 155.6 116 67.2
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 3.0e-36 155.2 116 69.8
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 3.9e-36 154.8 116 67.2
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 5.1e-36 154.5 116 69.0
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 1.5e-35 152.9 116 66.4
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 2.0e-35 152.5 116 67.2
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 2.0e-35 152.5 116 67.2
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 2.0e-35 152.5 116 67.2
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 7.4e-35 150.6 116 67.2
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 1.8e-33 146.0 116 66.4
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 6.1e-29 131.0 102 66.7
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 6.7e-28 127.5 69 88.4
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 6.7e-28 127.5 69 88.4
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 1.9e-22 109.4 72 72.2
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 9.4e-22 107.1 114 57.0
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.6e-19 99.0 52 88.5
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 1.7e-18 96.3 96 53.1
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 6.3e-18 94.4 56 80.4
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.7e-16 89.0 90 53.3
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 4.4e-11 71.6 116 43.1
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 9.8e-11 70.5 72 54.2
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 4.5e-08 61.6 77 48.1
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 1.5e-06 56.6 28 100.0
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.5e-06 55.8 111 37.8


User provided reference genes

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