Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.2e-281 971.1 481 100.0
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.9e-238 828.9 482 85.5
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 7.4e-238 827.0 482 85.5
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.7e-235 817.0 486 83.1
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.9e-234 815.1 486 83.1
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.2e-233 811.2 490 81.8
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 9.4e-233 810.1 490 81.6
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.6e-232 807.7 490 81.2
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.0e-203 712.6 488 70.9
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 4.5e-203 711.4 481 73.6
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 6.5e-202 707.6 486 74.1
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.3e-197 693.3 484 68.2
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.3e-197 693.3 490 69.4
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 5.9e-195 684.5 470 71.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 7.7e-195 684.1 483 71.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.9e-194 682.2 441 73.9
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 3.3e-193 678.7 488 67.2
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 3.3e-193 678.7 488 67.2
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.6e-192 675.2 484 69.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 6.8e-191 671.0 484 70.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.4e-190 668.7 487 68.6
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 4.4e-190 668.3 485 68.7
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.7e-189 666.4 476 69.7
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 2.4e-188 662.5 481 68.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.1e-188 661.8 523 65.6
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.7e-187 659.1 373 82.8
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 4.5e-187 658.3 484 68.4
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.9e-186 655.6 479 67.6
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 8.6e-186 654.1 491 65.8
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 8.9e-183 644.0 444 72.3
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.6e-182 642.5 364 83.2
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.4e-182 642.1 484 67.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.2e-181 639.4 488 63.7
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.9e-181 639.0 487 68.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 6.4e-181 637.9 484 66.9
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.9e-180 636.3 364 81.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 9.2e-180 634.0 486 66.3
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.0e-178 630.6 483 65.6
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.0e-178 629.0 392 75.8
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 5.0e-178 628.2 391 76.0
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 8.6e-178 627.5 415 72.5
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.5e-177 626.7 415 72.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.9e-177 626.3 415 72.0
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.5e-177 625.9 499 64.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 3.3e-177 625.5 415 72.0
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 4.3e-177 625.2 377 78.0
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 5.6e-177 624.8 415 71.6
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.6e-177 624.8 499 64.5
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.6e-176 623.2 377 77.7
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.8e-176 622.5 483 66.5
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.2e-176 621.3 396 74.2
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.4e-175 620.2 443 68.4
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.8e-175 619.8 484 65.5
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 2.3e-175 619.4 392 74.7
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.3e-175 619.4 490 65.3
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.1e-175 619.0 487 64.7
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 6.8e-175 617.8 440 70.0
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 3.4e-174 615.5 484 64.7
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.7e-173 613.2 484 64.9
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.2e-173 612.8 484 64.9
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 3.7e-173 612.1 444 67.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.1e-172 610.5 417 71.7
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.9e-172 609.8 490 64.9
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 9.2e-172 607.4 428 68.7
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.6e-171 606.7 488 63.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.5e-171 605.5 484 62.8
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 4.6e-171 605.1 411 71.3
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.3e-170 603.6 444 67.3
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.1e-170 601.7 378 75.9
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 5.1e-170 601.7 484 62.8
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 5.1e-170 601.7 484 63.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.9e-169 599.7 484 63.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.3e-169 598.6 456 65.8
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 7.3e-169 597.8 418 70.6
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 7.3e-169 597.8 515 60.8
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.2e-168 597.0 479 63.0
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.6e-168 595.5 482 63.7
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.4e-167 593.6 361 77.3
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 3.4e-166 589.0 415 69.2
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 4.4e-166 588.6 491 60.9
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 5.8e-166 588.2 499 60.9
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 6.4e-165 584.7 396 72.5
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.9e-161 573.2 375 70.4
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 2.5e-161 572.8 500 60.0
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.2e-160 570.5 492 61.8
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.4e-159 567.0 379 73.1
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.1e-159 565.8 574 53.5
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.4e-156 557.0 413 67.8
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 9.2e-156 554.3 394 68.8
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.5e-153 546.2 363 70.5
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 3.3e-153 545.8 357 71.1
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 3.3e-153 545.8 346 72.8
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.1e-151 540.8 467 58.7
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.0e-150 536.6 460 61.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.2e-149 533.1 348 71.6
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.1e-148 530.8 368 69.8
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.1e-145 520.8 479 57.4
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.3e-145 519.2 479 57.2
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 5.4e-140 501.9 448 57.8
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 2.1e-139 500.0 324 74.1
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.2e-133 479.9 369 62.6
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.9e-130 469.2 335 66.3
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.7e-128 462.6 530 48.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.8e-122 443.7 353 59.5
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.4e-116 424.1 244 77.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.4e-111 406.8 293 61.4
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.0e-106 391.3 316 63.3
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 2.2e-101 373.6 244 71.3
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.0e-98 363.2 376 54.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 5.9e-94 349.0 194 81.4
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.8e-80 303.5 239 61.1
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-71 273.9 202 57.9
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-71 273.9 204 57.4
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 4.1e-71 273.1 329 43.2
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.6e-70 269.6 202 57.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.9e-70 269.2 202 56.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.3e-69 267.3 314 43.0
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.3e-53 214.2 210 51.4
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 8.7e-37 159.1 141 61.0
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.1e-35 152.5 98 62.2
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.4e-31 141.7 165 50.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 4.8e-19 100.1 93 63.4
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 7.1e-15 86.3 84 61.9
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.3e-12 77.0 275 24.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.7e-11 73.9 269 23.4
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 6.3e-11 73.2 282 24.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.4e-10 72.0 276 23.6
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.8e-10 71.6 350 21.7
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.4e-10 71.2 269 23.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.0e-09 68.2 139 25.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.3e-08 65.5 272 22.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.0e-08 63.5 162 22.2


User provided reference genes

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