Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.8e-203 711.8 394 100.0
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.5e-191 672.9 395 95.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 4.9e-179 631.3 394 87.8
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 6.4e-179 630.9 394 88.6
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.3e-179 630.6 394 87.8
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.3e-179 630.6 394 87.8
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-177 626.7 394 87.1
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-177 626.7 394 87.1
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.8e-177 624.0 394 87.1
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 4.7e-174 614.8 394 86.5
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 2.3e-173 612.5 394 85.8
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.7e-171 605.1 394 85.3
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.4e-170 601.3 394 84.5
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 3.5e-169 598.6 394 82.5
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.3e-168 596.7 410 82.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 3.0e-168 595.5 394 82.2
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 8.6e-168 594.0 394 81.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.1e-167 593.6 394 84.0
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.5e-167 593.2 394 83.0
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 2.5e-167 592.4 394 83.5
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.5e-167 592.4 394 83.5
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.5e-167 590.5 394 81.7
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.1e-165 587.0 394 84.3
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.0
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.7
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 81.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.0e-164 582.8 394 81.5
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.0e-164 582.8 394 80.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 2.6e-164 582.4 394 81.5
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.6e-164 582.4 394 81.0
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 4.4e-164 581.6 394 82.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 9.9e-164 580.5 394 82.5
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.4e-162 576.6 397 81.6
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.4e-162 576.6 392 81.1
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.0e-160 570.5 395 81.5
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.3e-160 570.1 438 74.9
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 81.0
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 79.7
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.5e-159 565.8 394 79.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 4.3e-159 565.1 394 79.9
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 5.6e-159 564.7 394 77.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 7.3e-159 564.3 394 79.7
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.6e-158 563.1 370 85.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 8.1e-158 560.8 370 85.1
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.0e-157 558.5 394 79.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 79.2
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.7e-155 553.1 378 79.9
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.9e-155 552.4 394 79.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-155 552.4 404 77.5
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 4.9e-155 551.6 395 73.2
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 8.4e-155 550.8 397 72.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 78.2
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 76.4
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.4e-154 550.1 394 78.7
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 7.1e-154 547.7 395 72.4
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 9.3e-154 547.4 417 75.3
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 9.3e-154 547.4 394 74.9
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 6.0e-153 544.7 397 73.3
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 6.0e-153 544.7 397 72.0
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.0e-152 543.9 395 71.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.0e-152 543.9 394 73.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 8.7e-152 540.8 397 71.3
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.3e-150 537.0 398 71.9
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.3e-150 537.0 394 78.2
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 75.1
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 4.8e-150 535.0 394 77.4
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-149 533.1 398 71.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-149 533.1 395 68.4
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-149 532.7 398 71.1
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-149 532.7 398 71.1
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 5.3e-149 531.6 394 78.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.0e-148 529.6 403 70.7
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 4.5e-148 528.5 394 72.8
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.8e-148 528.1 394 69.5
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 5.8e-148 528.1 394 77.2
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 7.6e-148 527.7 397 76.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-147 526.9 397 76.1
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.3e-147 526.9 394 77.2
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 4.9e-147 525.0 394 76.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 3.9e-144 515.4 394 75.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-142 510.4 379 70.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.1e-142 509.6 409 73.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 8.1e-142 507.7 395 73.4
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 5.3e-141 505.0 394 74.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.5e-140 503.4 395 72.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.4e-140 502.3 398 73.1
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.9e-138 496.5 395 71.1
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 9.3e-138 494.2 426 69.5
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.1e-137 493.0 393 72.8
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.1e-133 479.2 404 64.1
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 4.5e-132 475.3 387 71.6
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.3e-131 473.8 358 72.1
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.2e-130 469.2 398 69.1
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.5e-129 465.7 394 71.1
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-126 456.4 394 62.7
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 6.9e-125 451.4 372 72.0
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 4.5e-116 422.2 394 57.9
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-112 410.6 382 59.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.4e-112 410.6 346 72.8
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.7e-102 377.1 394 56.9
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.7e-97 359.8 394 51.3
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.4e-96 357.5 328 69.2
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 5.2e-96 355.5 287 74.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.3e-91 340.9 247 70.9
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.1e-90 337.8 397 50.6
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 3.2e-90 336.3 302 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.0e-88 331.3 396 47.7
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.9e-75 286.6 295 54.2
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.9e-75 286.6 378 47.4
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 5.8e-71 272.3 182 72.5
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.3e-70 271.2 182 72.5
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 6.4e-70 268.9 390 53.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 6.2e-65 252.3 205 67.8
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.6e-57 227.6 292 48.3
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 3.4e-55 219.9 540 33.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.2e-49 201.4 153 73.2
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.2e-49 201.4 122 83.6
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 3.4e-47 193.4 165 62.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 2.4e-45 187.2 125 76.8
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.2e-44 184.9 420 31.9
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 9.6e-42 175.3 166 55.4
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.6e-41 173.3 409 33.5
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 4.4e-39 166.4 392 31.4
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 5.1e-35 152.9 137 59.9
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.1e-34 151.8 90 82.2
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.6e-31 140.6 71 87.3
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-30 137.1 120 62.5
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-30 137.1 125 64.8
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.6e-28 131.3 114 61.4
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 3.5e-28 130.2 151 48.3
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.0e-27 128.6 71 91.5
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 3.9e-27 126.7 137 52.6
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 9.6e-26 122.1 147 44.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.8e-25 120.6 88 67.0
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 6.9e-24 115.9 178 53.9
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 5.1e-19 99.8 80 68.8
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-18 98.2 121 50.4
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.5e-18 97.4 50 84.0
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 4.0e-16 90.1 51 86.3
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.4e-15 87.0 63 61.9
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.7e-14 84.7 44 93.2
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.7e-12 77.4 77 49.4
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.5e-12 77.0 46 84.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 3.0e-11 73.9 47 72.3
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 7.4e-10 69.3 35 97.1
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.8e-09 67.4 38 84.2
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 1.7e-06 58.2 50 62.0


User provided reference genes

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