Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 4.2e-66 254.6 133 100.0
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 4.2e-58 228.0 133 89.5
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 9.7e-55 216.9 133 83.5
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.8e-53 212.6 133 82.7
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 9.1e-53 210.3 128 85.2
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.2e-52 209.9 133 82.0
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 2.6e-52 208.8 131 80.9
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 4.5e-52 208.0 133 79.7
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.7e-51 206.1 132 77.3
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.7e-51 206.1 131 77.9
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.2e-51 205.7 133 79.7
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.9e-51 205.3 131 80.9
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.9e-51 205.3 128 82.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.9e-51 205.3 132 81.1
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 6.5e-51 204.1 128 81.2
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 6.5e-51 204.1 131 80.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 8.5e-51 203.8 128 81.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 8.5e-51 203.8 131 77.1
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 8.5e-51 203.8 131 77.9
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-50 203.4 131 77.1
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.4e-50 203.0 131 77.1
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 4.2e-50 201.4 133 74.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.2e-50 201.4 131 75.6
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.2e-50 200.7 131 75.6
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.2e-50 200.7 133 79.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 2.1e-49 199.1 132 77.3
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.7e-49 198.7 126 81.0
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.7e-49 198.7 117 87.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.7e-49 198.0 121 84.3
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 4.7e-49 198.0 132 76.5
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 4.7e-49 198.0 121 83.5
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 7.9e-49 197.2 133 77.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.4e-48 196.4 131 77.9
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.4e-48 196.4 131 77.9
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.4e-48 196.4 129 77.5
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.4e-48 196.4 130 73.1
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.3e-48 195.7 133 75.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 3.0e-48 195.3 131 77.9
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 5.1e-48 194.5 133 79.7
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 5.1e-48 194.5 133 75.9
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 5.1e-48 194.5 131 79.4
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 6.7e-48 194.1 119 84.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 8.8e-48 193.7 124 79.8
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 8.8e-48 193.7 129 79.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.1e-47 193.4 131 74.0
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.5e-47 193.0 131 71.8
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 1.5e-47 193.0 133 75.2
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.5e-47 193.0 132 75.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 2.0e-47 192.6 121 81.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.6e-47 192.2 133 73.7
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 4.4e-47 191.4 133 73.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 7.4e-47 190.7 131 74.8
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.2e-46 189.1 131 74.8
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.2e-46 189.1 126 75.4
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.2e-46 189.1 116 83.6
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 6.3e-46 187.6 133 72.2
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 6.3e-46 187.6 133 72.2
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 1.1e-45 186.8 133 72.2
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.8e-45 186.0 121 77.7
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 2.4e-45 185.7 117 84.6
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 4.1e-45 184.9 117 81.2
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 4.1e-45 184.9 119 81.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 4.1e-45 184.9 119 81.5
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 7.0e-45 184.1 111 84.7
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 7.0e-45 184.1 117 80.3
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 9.1e-45 183.7 119 80.7
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.5e-44 183.0 130 76.2
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.6e-44 182.2 121 81.0
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 2.6e-44 182.2 116 81.9
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 3.5e-44 181.8 116 81.9
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.9e-44 181.0 119 79.0
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 7.7e-44 180.6 110 83.6
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.0e-43 180.3 113 81.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 1.3e-43 179.9 133 70.7
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.3e-43 179.9 131 67.9
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.3e-43 179.9 119 78.2
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 6.5e-43 177.6 126 73.0
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.9e-42 176.0 117 76.9
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.5e-42 175.6 117 74.4
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.5e-42 175.6 121 76.0
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.2e-42 175.3 131 66.4
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.2e-42 175.3 131 66.4
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 9.4e-42 173.7 118 76.3
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.1e-41 172.6 117 74.4
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.7e-41 172.2 131 68.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.6e-41 171.8 131 67.2
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.7e-41 171.4 131 67.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.7e-41 171.4 128 66.4
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 6.1e-41 171.0 128 71.9
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.0e-40 170.2 122 74.6
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 2.0e-39 166.0 131 65.6
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.6e-39 165.6 131 65.6
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 3.3e-39 165.2 131 65.6
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.3e-39 165.2 117 72.6
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.3e-39 165.2 131 65.6
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 3.3e-39 165.2 114 75.4
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.7e-39 164.5 131 64.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 5.7e-39 164.5 133 68.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 2.4e-37 159.1 126 64.3
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.5e-36 155.2 132 63.6
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 3.5e-36 155.2 132 63.6
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 3.5e-36 155.2 132 63.6
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 5.9e-36 154.5 132 62.9
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.0e-35 153.7 132 62.9
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.3e-35 153.3 132 62.1
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.2e-35 152.5 123 64.2
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.2e-34 148.7 124 60.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.6e-33 146.4 131 57.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 2.4e-29 132.5 122 57.4
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 5.3e-29 131.3 123 57.7
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 4.5e-28 128.3 123 56.9
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 4.5e-28 128.3 123 56.9
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 4.5e-28 128.3 123 56.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 5.9e-28 127.9 119 61.3
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 7.7e-28 127.5 123 56.1
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.0e-24 117.1 75 82.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.1e-21 107.1 68 77.9
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 7.7e-20 100.9 79 73.4
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 8.6e-19 97.4 122 49.2
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.8e-17 92.4 93 51.6
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 3.6e-17 92.0 53 79.2
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 6.8e-16 87.8 87 54.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 3.4e-15 85.5 62 67.7
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 3.7e-06 55.5 51 56.9


User provided reference genes

Program Settings