Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.6e-115 419.5 212 100.0
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 9.3e-92 340.5 213 81.7
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.9e-84 316.2 213 79.3
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 4.2e-84 315.1 212 77.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.2e-84 315.1 212 77.8
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 4.2e-84 315.1 223 75.3
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.1e-83 312.8 212 77.4
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.7e-82 309.7 212 76.4
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.3e-79 298.1 205 76.6
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.3e-73 278.5 214 72.4
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 7.4e-73 277.7 213 71.8
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 2.8e-72 275.8 212 70.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 8.1e-72 274.2 212 72.2
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.1e-71 273.9 214 72.9
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 2.4e-71 272.7 214 72.4
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 4.0e-71 271.9 212 69.8
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.2e-70 270.4 212 70.8
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 7.6e-70 267.7 219 67.6
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.3e-66 256.1 213 67.1
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.0e-66 255.8 215 69.8
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.1e-65 253.8 214 65.9
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.9e-65 253.1 215 67.4
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 4.3e-65 251.9 210 67.6
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 4.8e-64 248.4 209 67.0
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 8.2e-64 247.7 211 65.4
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.1e-63 247.3 214 68.7
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 5.3e-63 245.0 211 64.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 5.3e-63 245.0 214 65.9
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.0e-62 243.0 211 65.9
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.6e-62 242.7 217 63.1
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 7.6e-62 241.1 214 65.0
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.0e-61 240.7 215 65.1
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.3e-61 240.4 216 65.3
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.3e-61 240.4 208 64.4
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.3e-61 240.4 218 66.5
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.8e-61 238.8 209 67.0
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.8e-61 238.8 215 64.7
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 6.5e-61 238.0 218 64.2
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 6.5e-61 238.0 214 65.4
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 8.4e-61 237.7 218 62.8
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 8.4e-61 237.7 214 63.1
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 8.4e-61 237.7 218 61.9
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.1e-60 237.3 216 63.4
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.1e-60 237.3 205 64.9
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.9e-60 236.5 214 65.0
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.2e-60 235.7 155 77.4
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 4.2e-60 235.3 207 62.8
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 5.5e-60 235.0 206 63.6
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 5.5e-60 235.0 206 63.6
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 9.3e-60 234.2 197 67.5
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 2.1e-59 233.0 212 61.8
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 2.1e-59 233.0 214 63.6
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 3.5e-59 232.3 212 62.7
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 3.5e-59 232.3 203 62.6
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 6.1e-59 231.5 202 63.4
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 6.1e-59 231.5 213 62.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.0e-58 230.7 213 63.8
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.3e-58 230.3 214 64.0
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.3e-58 229.6 214 63.6
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.0e-58 229.2 214 63.1
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 3.9e-58 228.8 212 61.3
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 5.1e-58 228.4 212 61.3
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 6.7e-58 228.0 210 61.9
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 8.7e-58 227.6 147 77.6
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.1e-57 227.3 193 65.8
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.1e-57 227.3 213 61.5
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 3.3e-57 225.7 182 67.0
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 1.3e-56 223.8 212 62.7
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.6e-56 223.4 203 62.6
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 8.2e-56 221.1 213 60.1
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.4e-55 220.3 202 63.9
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.8e-55 219.9 217 59.4
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 5.3e-55 218.4 203 62.1
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.2e-54 217.2 120 85.8
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-54 216.9 212 59.4
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 2.0e-54 216.5 218 58.7
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.0e-54 216.5 162 68.5
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 5.9e-54 214.9 150 73.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 7.7e-54 214.5 204 59.3
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.0e-53 214.2 122 85.2
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.0e-53 214.2 198 59.1
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.9e-53 212.6 213 57.3
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.8e-53 212.2 212 59.0
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 8.5e-53 211.1 141 74.5
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.1e-52 210.7 120 82.5
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.4e-52 210.3 121 80.2
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.4e-52 210.3 206 59.7
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.9e-52 209.9 122 82.8
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.9e-52 209.9 122 82.8
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.9e-52 209.9 122 82.8
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.2e-52 209.1 210 59.5
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 7.2e-52 208.0 184 65.8
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 2.7e-51 206.1 133 75.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 3.6e-51 205.7 143 72.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 4.6e-51 205.3 214 57.5
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 4.6e-51 205.3 214 57.5
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.4e-50 203.8 174 67.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 6.7e-50 201.4 190 60.5
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 3.3e-49 199.1 113 80.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 4.3e-49 198.7 213 55.4
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.8e-48 196.1 208 56.2
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.8e-48 196.1 201 57.2
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 3.7e-48 195.7 185 56.2
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.4e-47 193.7 187 61.0
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 9.1e-47 191.0 113 76.1
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 4.5e-46 188.7 142 65.5
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 7.7e-46 188.0 113 75.2
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 8.5e-45 184.5 210 53.3
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 5.5e-44 181.8 191 53.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 9.4e-44 181.0 120 69.2
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.3e-42 176.4 152 59.2
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 3.3e-41 172.6 109 74.3
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 4.4e-41 172.2 182 56.6
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 4.4e-41 172.2 184 53.3
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.7e-40 170.2 132 63.6
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.1e-39 167.5 109 72.5
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 3.1e-39 166.0 160 55.0
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 9.1e-39 164.5 108 69.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.0e-38 163.3 157 52.2
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 4.5e-38 162.2 113 64.6
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 4.2e-36 155.6 158 55.7
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 9.4e-36 154.5 179 52.5
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 2.5e-28 129.8 109 54.1
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.2e-27 127.5 133 47.4
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 1.7e-24 117.1 151 43.0
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 4.1e-23 112.5 108 50.9
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.8e-16 89.7 96 49.0
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 9.5e-12 74.7 152 39.5


User provided reference genes

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