Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 2068.5 973 100.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1888.2 972 90.5
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1796.6 975 85.9
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1771.1 974 83.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1766.9 975 84.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1745.3 979 82.9
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1741.9 973 83.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1734.5 979 82.7
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1712.2 953 83.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1703.7 976 81.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1692.6 974 80.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1676.8 975 79.5
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1674.1 987 78.8
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1672.1 973 79.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1672.1 926 83.4
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1669.8 974 78.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1657.1 975 78.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1655.6 975 78.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1652.5 959 79.9
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1646.7 975 78.1
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1645.9 979 78.1
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1643.6 976 78.2
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1643.2 973 77.4
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 974 78.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1633.2 976 77.4
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1632.5 973 77.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1623.2 974 76.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1615.5 974 77.0
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 974 76.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 974 76.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1608.2 979 76.7
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 975 76.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1598.6 969 77.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1594.3 973 75.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 974 74.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 973 75.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 973 75.6
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 970 75.9
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 970 75.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 972 76.3
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1572.8 971 75.8
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 966 75.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 986 73.9
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 972 75.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 976 74.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 974 74.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 964 75.7
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 965 76.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 968 74.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 976 75.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 969 74.1
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1553.5 971 73.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 978 73.4
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 975 74.7
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1548.9 965 74.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 971 73.5
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1546.6 972 74.2
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 956 74.3
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 974 73.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 985 72.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 970 74.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 969 73.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 972 73.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 965 74.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 975 73.2
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 971 73.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 971 73.2
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1526.1 967 73.0
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 980 73.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 976 73.8
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1516.9 965 72.7
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 964 73.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1515.4 977 72.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 967 71.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1511.5 973 72.9
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 964 72.7
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 972 73.4
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 974 72.0
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1501.9 981 72.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1501.9 976 71.8
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1498.8 969 72.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 972 71.6
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1494.2 979 71.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1491.5 941 73.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 981 72.1
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 973 71.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 872 77.3
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 966 71.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 1003 70.1
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 969 70.1
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1468.4 849 79.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 960 72.5
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 891 75.6
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1455.3 979 70.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 978 70.0
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 852 77.2
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1444.9 978 68.0
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 978 69.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 981 69.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 976 69.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 971 68.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1432.2 976 69.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 980 67.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 965 69.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 973 68.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 976 69.1
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1422.1 973 68.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 976 69.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 979 68.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 982 68.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 982 68.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 976 68.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1405.6 976 68.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 976 68.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1392.1 980 68.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1383.2 982 68.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1378.6 1004 63.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1328.5 980 64.1
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1323.5 976 65.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1314.7 768 79.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1311.6 762 78.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1286.2 982 64.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1273.8 984 63.9
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1261.5 788 75.0
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1253.4 852 69.4
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1230.3 789 72.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1148.7 787 68.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 8.9e-307 1057.0 980 53.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.6e-301 1037.7 684 70.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 9.5e-293 1010.4 966 52.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.7e-281 973.0 696 67.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 9.9e-274 947.2 962 50.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.5e-263 912.1 961 48.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.2e-256 889.0 564 74.5
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.1e-254 881.7 969 47.2
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 7.4e-229 798.1 879 48.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.5e-197 694.1 402 76.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-131 474.9 404 59.2
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.2e-130 471.9 288 76.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.6e-125 454.1 344 65.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-114 418.3 370 58.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.4e-94 351.3 215 75.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.2e-90 339.0 202 73.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-89 334.7 276 60.5
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.3e-79 299.7 192 72.9
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.6e-72 278.1 156 78.8
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.4e-64 250.8 159 71.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.9e-63 248.1 709 29.3
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-61 242.7 214 53.7
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 2.5e-59 235.0 143 74.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-54 219.2 147 68.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.2e-48 199.5 368 38.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.7e-44 183.3 842 23.8
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.6e-42 179.1 158 53.8
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.8e-41 175.6 150 58.7
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.8e-39 167.9 96 77.1
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 6.0e-37 160.6 92 78.3
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.9e-35 155.6 149 54.4
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.5e-35 155.2 119 59.7
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-34 151.0 118 61.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.9e-30 139.0 92 71.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.8e-26 124.4 89 65.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-23 115.5 183 37.2
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 8.7e-20 103.6 101 50.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 9.7e-19 100.1 71 69.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.8e-17 95.9 188 31.4
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 5.0e-15 87.8 121 41.3
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.3e-12 79.0 114 43.0
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.4e-09 68.9 47 68.1
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-08 65.5 57 49.1
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-07 63.2 44 68.2
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 5.0e-07 61.2 76 44.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 8.5e-07 60.5 78 41.0


User provided reference genes

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