Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 2067.0 975 100.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1872.4 976 89.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1805.0 974 85.5
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1794.2 975 85.9
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1788.5 979 85.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1785.8 973 85.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1776.9 979 84.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1756.5 974 83.9
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1756.1 953 85.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1748.0 977 83.8
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1741.5 976 82.9
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1740.3 975 83.4
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1737.2 976 82.9
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1731.5 974 82.9
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1718.0 926 85.9
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1714.9 988 81.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1711.4 979 81.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1710.3 960 82.9
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1706.4 974 80.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1705.3 975 80.8
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1703.7 976 81.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1703.7 976 81.0
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1703.0 974 81.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1695.2 974 80.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1689.5 976 80.4
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1688.7 974 79.9
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1687.2 977 81.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1681.8 975 80.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1673.7 980 80.3
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1673.3 969 80.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 976 79.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1663.7 975 79.1
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1656.7 974 79.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1654.4 973 78.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1645.6 974 78.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1639.4 973 79.0
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1637.1 971 78.6
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 971 78.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1628.6 976 76.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1628.2 970 77.2
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1627.5 987 77.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1625.9 976 77.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1624.4 965 77.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1624.0 972 78.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1622.8 973 77.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 973 78.3
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1621.3 965 78.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 971 76.8
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 975 77.8
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 976 77.7
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1617.4 966 78.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1616.3 966 78.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 973 77.4
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 971 76.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 977 78.2
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1608.2 975 77.1
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 971 78.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 972 76.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1601.3 968 76.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1599.7 973 76.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1592.8 978 76.1
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 968 76.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 968 76.5
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 977 76.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1588.2 972 76.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1587.4 969 76.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 972 75.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 970 76.3
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1580.8 977 76.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1579.3 986 74.7
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 973 76.0
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 972 75.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 970 76.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1572.8 970 75.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 969 75.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 978 75.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 976 75.2
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 981 75.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 981 74.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 973 74.3
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 976 75.0
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 981 74.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 982 74.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 941 76.4
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 974 74.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 974 74.7
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 969 73.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1520.4 961 74.8
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1519.6 984 72.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 1002 72.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 967 73.8
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 981 71.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 980 73.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 878 78.2
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 978 72.0
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1493.0 872 78.1
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 980 72.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 977 72.0
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 978 72.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1483.0 974 71.1
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 973 71.9
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 849 80.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1473.0 976 71.5
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 979 72.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 973 71.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 980 71.4
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 973 70.8
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 980 71.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 980 71.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 976 70.9
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 976 70.8
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1455.3 853 78.2
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1454.5 976 71.1
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 976 70.9
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1439.1 980 70.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1433.7 979 70.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1399.0 1005 65.4
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1374.0 976 68.2
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1365.9 977 66.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1362.1 763 81.5
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1338.6 980 67.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1320.8 982 66.6
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 768 79.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1290.0 788 76.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1273.1 852 71.0
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1265.8 789 74.4
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1216.8 788 72.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1078.9 980 54.9
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.6e-309 1064.3 685 73.3
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 4.3e-301 1038.1 966 53.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 3.3e-293 1011.9 696 70.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.6e-285 984.6 964 53.0
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.9e-272 943.0 962 50.5
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-265 920.2 977 49.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 6.0e-263 911.4 564 75.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 5.7e-237 825.1 843 50.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.2e-206 722.2 403 81.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.1e-142 510.4 289 82.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.0e-132 478.8 404 60.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.2e-125 455.3 344 65.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.2e-116 424.5 369 59.6
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.5e-109 400.6 216 87.0
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.1e-94 350.9 193 86.5
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-91 342.0 276 61.6
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-91 342.0 202 74.8
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.6e-75 287.0 159 81.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-73 282.3 214 63.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.9e-71 273.9 143 86.7
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.9e-71 273.9 156 77.6
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.8e-63 247.7 638 30.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.7e-52 212.2 147 66.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-52 211.8 368 39.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.2e-46 191.0 150 62.7
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 6.2e-42 177.2 93 82.8
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.9e-40 169.9 158 53.8
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.7e-39 169.1 887 22.9
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 3.0e-36 158.3 149 55.0
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.5e-35 155.2 93 82.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 6.2e-34 150.6 119 58.8
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.1e-33 149.8 92 71.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 7.9e-29 133.7 89 66.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 3.0e-28 131.7 115 56.5
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 6.9e-25 120.6 183 38.3
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 8.8e-20 103.6 121 47.9
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.1e-19 103.2 184 34.2
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.8e-17 95.9 71 66.2
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.1e-17 95.1 294 28.6
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 5.3e-17 94.4 114 48.2
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.9e-12 78.2 46 71.7
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 7.4e-11 73.9 76 51.3
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.8e-09 69.3 48 75.0
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.0e-07 63.5 48 64.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.2e-06 57.4 45 66.7


User provided reference genes

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