Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.4e-178 627.1 318 100.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 8.0e-156 553.9 319 89.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 8.6e-150 533.9 318 85.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 6.1e-148 527.7 321 85.4
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.4e-144 514.6 321 84.4
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 7.0e-144 514.2 321 84.4
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-143 513.1 319 81.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.3e-142 509.2 319 83.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-140 503.4 317 83.6
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-136 490.3 325 76.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.2e-136 488.8 326 77.3
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.3e-134 483.4 327 73.7
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-133 479.9 326 74.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-133 479.9 326 74.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.9e-133 479.6 324 74.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 7.3e-133 477.6 325 73.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.6e-132 476.5 325 73.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 8.0e-132 474.2 325 72.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.4e-131 473.4 320 72.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.1e-131 472.2 328 72.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-130 470.3 325 71.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.6e-130 469.2 322 76.1
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.3e-129 466.8 320 72.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.9e-129 465.7 329 70.2
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 4.9e-129 464.9 320 72.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.1e-128 463.8 324 73.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.4e-128 462.6 325 71.1
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.1e-128 461.8 325 71.1
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.0e-128 461.1 315 72.7
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 7.0e-128 461.1 310 77.1
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.6e-127 459.9 316 68.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.5e-127 458.8 308 74.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.8e-127 457.6 321 68.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.0e-126 457.2 341 68.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.7e-126 456.4 339 70.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.9e-126 455.3 329 73.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.0e-126 454.9 353 66.6
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 8.6e-126 454.1 339 70.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 8.6e-126 454.1 310 71.9
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.1e-125 453.8 314 72.9
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.5e-125 453.4 327 70.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.3e-125 451.8 326 74.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 9.5e-125 450.7 348 65.5
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.6e-124 449.9 317 71.3
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.6e-124 449.9 310 71.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-124 449.9 313 73.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 4.7e-124 448.4 315 73.3
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.1e-123 447.2 309 70.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.8e-123 446.4 309 73.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.3e-123 446.0 321 67.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.1e-123 445.7 322 68.6
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 4.0e-123 445.3 326 67.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.2e-123 444.9 322 67.1
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 5.2e-123 444.9 351 67.8
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 2.6e-122 442.6 307 73.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.6e-122 442.6 308 72.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.6e-122 442.6 309 72.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.4e-122 442.2 309 72.2
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 5.8e-122 441.4 321 67.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.9e-121 439.1 324 71.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 8.3e-121 437.6 310 68.7
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-120 437.2 325 68.0
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.1e-120 437.2 318 66.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-120 436.8 321 66.4
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-120 436.8 330 68.8
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.4e-120 436.0 337 67.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.4e-120 436.0 314 71.3
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.1e-120 435.3 320 69.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 5.4e-120 434.9 311 71.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 9.2e-120 434.1 311 71.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.6e-119 433.3 330 68.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.7e-119 432.6 311 70.7
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.6e-118 427.9 316 71.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.1e-117 427.2 327 65.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.5e-117 426.8 296 70.9
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.5e-117 426.0 312 72.4
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 3.3e-117 425.6 330 66.7
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 5.6e-117 424.9 332 69.0
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-115 420.2 254 78.3
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.4e-115 420.2 324 68.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.2e-115 418.3 328 69.5
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.4e-114 415.6 319 63.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 4.4e-114 415.2 314 68.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 5.8e-114 414.8 311 70.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 7.6e-114 414.5 321 64.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 8.4e-113 411.0 325 64.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.1e-112 410.6 307 65.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.1e-112 410.6 322 66.8
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.4e-112 409.5 219 90.9
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 9.2e-112 407.5 329 66.9
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.1e-111 406.4 320 64.4
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.6e-111 405.2 313 65.5
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 4.6e-111 405.2 293 74.1
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 7.8e-111 404.4 323 69.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 4.3e-109 398.7 317 65.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 5.6e-109 398.3 311 66.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.6e-108 396.7 299 65.9
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.8e-107 393.3 296 67.6
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 7.6e-106 387.9 291 66.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-105 387.1 298 65.4
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.9e-105 386.0 323 61.9
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.2e-104 382.1 284 69.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 9.3e-104 380.9 329 61.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-103 380.2 287 67.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-102 376.3 258 74.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 4.3e-101 372.1 334 63.2
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.8e-100 369.4 333 58.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 3.6e-100 369.0 319 59.2
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.4e-99 367.1 296 64.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 4.5e-98 362.1 291 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.5e-95 352.4 292 63.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-93 347.4 278 66.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.3e-93 345.9 278 66.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 7.4e-93 344.7 331 59.8
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 5.3e-91 338.6 222 72.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.2e-89 333.2 268 68.7
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 4.9e-89 332.0 237 67.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-87 327.0 281 60.1
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.9e-87 324.7 266 62.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 4.5e-82 308.9 324 49.1
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 2.2e-81 306.6 232 68.1
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-79 300.1 256 60.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.0e-75 284.6 229 64.2
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.5e-74 283.9 284 56.3
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.7e-73 280.4 223 64.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.5e-73 278.5 161 84.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.6e-71 273.9 272 54.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.2e-68 263.5 267 59.2
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.4e-67 260.8 230 55.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.8e-65 252.7 170 66.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.2e-64 249.6 212 63.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.2e-64 249.2 212 60.4
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.8e-60 236.5 224 58.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.3e-60 235.3 222 56.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.3e-60 235.3 222 56.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.7e-57 227.3 189 65.1
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.9e-57 226.5 223 55.6
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.2e-56 223.0 140 72.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.2e-55 221.1 230 48.7
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.7e-55 219.9 220 53.6
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-54 218.0 216 57.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.7e-52 210.7 136 75.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 2.4e-51 206.8 185 59.5
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 9.1e-51 204.9 242 50.4
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.3e-45 186.4 116 85.3
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-44 184.5 241 45.2
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.2e-40 169.9 148 52.7
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 4.2e-40 169.5 275 38.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.6e-39 166.4 134 61.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.8e-36 156.8 319 36.4
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.8e-36 156.0 234 36.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.9e-34 149.1 109 62.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.1e-32 144.8 307 33.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 7.2e-32 142.1 178 46.1
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 7.2e-32 142.1 178 46.1
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-31 141.4 183 45.4
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.8e-31 140.2 188 47.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.8e-31 140.2 273 41.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 8.0e-31 138.7 122 64.8
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 7.5e-29 132.1 82 82.9
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 9.5e-24 115.2 81 65.4
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 3.4e-21 106.7 62 66.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.8e-21 105.9 175 42.9
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.5e-21 105.5 95 54.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 9.8e-21 105.1 64 65.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.7e-20 104.4 95 49.5
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 1.9e-19 100.9 62 64.5
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 2.4e-19 100.5 63 63.5
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 7.0e-19 99.0 61 63.9
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 7.0e-19 99.0 61 63.9
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.2e-18 98.2 63 63.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.7e-18 97.1 65 56.9
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 4.6e-18 96.3 115 51.3
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-17 94.7 78 57.7
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 5.0e-17 92.8 66 57.6
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 5.0e-17 92.8 66 57.6
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 7.3e-16 89.0 75 61.3
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.2e-15 88.2 62 56.5
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.2e-15 88.2 62 56.5
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 3.6e-15 86.7 109 37.6
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-10 71.2 70 51.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 4.6e-10 69.7 92 43.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.3e-09 67.4 91 44.0
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 8.1e-07 58.9 89 39.3
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.3e-06 57.4 71 47.9


User provided reference genes

Program Settings