Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1886.3 946 100.0
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1590.9 952 84.5
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1585.9 953 84.6
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1555.8 956 82.0
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1547.7 958 80.6
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1526.1 967 79.5
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1524.6 968 79.3
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1518.1 967 79.0
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1516.1 993 77.4
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1473.0 964 76.5
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1439.9 938 76.5
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1436.8 953 76.6
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1433.3 963 74.7
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1428.7 920 77.1
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1424.5 911 77.4
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1424.5 910 77.6
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1419.4 935 75.2
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1415.2 933 75.6
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1411.7 910 76.7
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1406.7 961 73.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1389.8 948 74.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1381.3 946 74.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1379.0 957 72.4
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1378.2 957 72.5
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1375.1 946 73.8
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1374.4 919 74.6
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1373.2 937 72.7
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1372.5 947 72.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1371.3 956 74.4
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1369.0 959 72.2
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1364.7 924 72.9
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1363.6 932 73.3
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1361.7 950 71.9
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1361.3 898 74.5
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1358.6 920 73.6
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1357.0 916 74.2
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1357.0 909 73.9
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1356.7 968 70.9
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1355.1 895 75.0
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1350.9 935 72.2
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1350.5 905 74.0
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1350.1 930 72.8
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1349.0 924 72.6
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1349.0 922 72.7
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1347.0 951 71.9
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1347.0 875 76.2
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1344.7 895 74.6
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1342.4 918 73.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 881 74.6
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1339.3 900 73.7
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1329.3 964 71.7
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1328.9 906 74.0
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1328.9 994 69.3
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1327.4 915 72.8
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1327.0 944 72.0
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 904 72.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1309.7 882 74.3
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1308.1 1027 66.1
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1295.0 921 71.2
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1294.6 907 70.9
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1292.7 811 79.0
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1289.6 917 72.1
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1283.5 948 68.8
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 817 77.4
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1273.1 904 70.2
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1268.8 941 68.4
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1256.5 825 74.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1253.0 968 69.8
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1241.5 898 70.5
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1229.9 959 66.0
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1222.6 911 67.4
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 919 67.2
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 912 66.9
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 916 66.4
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1200.3 950 64.5
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1196.0 871 68.4
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1194.5 911 66.2
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1191.0 874 68.0
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1186.8 947 63.5
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1186.4 956 66.0
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1183.7 932 66.3
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 894 66.6
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1176.4 894 66.4
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1174.1 955 63.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1172.5 887 64.9
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1164.4 898 65.3
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1156.7 960 62.7
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1151.7 956 62.1
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1151.0 901 64.2
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1149.0 872 66.4
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1142.9 971 62.0
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1132.9 869 64.3
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1082.4 906 62.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1082.0 809 66.5
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 4.4e-295 1018.1 788 66.2
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.5e-279 966.5 880 56.2
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 8.4e-278 960.7 708 67.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 6.1e-268 927.9 906 52.0
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.9e-261 906.4 673 68.1
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.6e-260 901.7 616 74.0
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 3.3e-258 895.6 599 73.3
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.3e-257 893.6 596 75.3
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 4.5e-247 858.6 584 73.3
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.1e-216 755.7 905 47.0
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 1.9e-205 720.3 552 64.7
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.8e-204 716.5 942 46.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 7.5e-202 708.4 514 69.3
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.4e-195 687.6 621 56.7
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 4.4e-194 682.6 445 74.4
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 8.4e-193 678.3 748 48.5
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.8e-187 660.6 530 63.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.9e-181 640.6 410 74.9
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 4.8e-180 636.0 397 78.6
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 3.1e-131 473.8 362 67.4
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.4e-117 426.8 266 77.8
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 9.5e-104 382.5 290 67.6
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 2.3e-102 377.9 273 70.7
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.3e-89 335.5 216 77.8
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-88 331.6 338 54.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 2.3e-81 308.1 238 62.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 6.2e-63 246.9 174 70.1
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 3.2e-59 234.6 250 50.8
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.5e-53 215.7 217 49.8
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.9e-41 174.5 241 45.6
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.1e-35 156.4 181 50.8
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.6e-34 152.5 98 76.5
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 3.9e-25 121.3 424 25.0
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-23 114.8 268 32.1
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 5.3e-22 110.9 82 63.4
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 3.8e-20 104.8 112 58.0
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.0e-18 97.1 58 82.8
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 8.2e-15 87.0 69 66.7
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.6e-10 71.6 122 41.8
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 8.0e-10 70.5 52 67.3
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 1.4e-06 59.7 68 50.0
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 7.0e-06 57.4 37 73.0


User provided reference genes

Program Settings