Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-97 359.0 185 100.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.8e-81 305.1 187 86.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-79 300.1 166 94.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 6.2e-76 287.7 187 80.7
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 3.1e-75 285.4 187 80.2
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.2e-74 283.5 187 79.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.6e-74 282.3 187 79.1
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-74 282.3 187 79.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.5e-74 281.6 187 79.1
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.9e-74 280.4 187 78.6
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-73 277.7 194 76.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-73 277.7 194 76.8
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-73 277.7 194 76.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.4e-72 275.8 177 79.7
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.4e-72 274.6 177 80.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.2e-71 273.5 177 78.5
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.2e-71 273.5 177 78.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.1e-71 272.7 177 79.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.7e-71 272.3 184 75.5
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.5e-71 271.9 177 79.7
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.6e-71 271.6 177 81.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 7.9e-71 270.8 177 78.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.0e-70 270.4 177 79.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.0e-70 270.4 177 77.4
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.8e-70 269.6 176 78.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.3e-70 269.2 177 78.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.1e-69 266.9 177 78.0
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.1e-69 266.9 177 76.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.1e-69 266.9 177 76.3
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.9e-69 266.2 177 75.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.9e-69 266.2 177 76.3
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.3e-69 265.4 177 76.8
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.3e-69 265.0 177 76.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 4.3e-69 265.0 177 77.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.6e-69 264.6 177 76.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.3e-68 263.5 177 75.7
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-68 263.1 179 74.3
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.6e-68 263.1 176 75.6
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.1e-68 262.7 176 76.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.1e-68 262.7 189 73.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.8e-68 262.3 176 76.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.6e-68 261.9 177 75.1
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.6e-68 261.9 177 75.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.2e-68 261.2 177 76.8
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.1e-68 260.8 177 75.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.1e-68 260.8 177 75.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.1e-67 260.4 177 75.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.4e-67 260.0 177 75.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.4e-67 260.0 175 79.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.8e-67 259.6 176 75.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.4e-67 259.2 177 76.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.0e-67 258.5 177 75.1
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 5.3e-67 258.1 178 73.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 6.9e-67 257.7 177 75.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.9e-67 257.7 176 75.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 9.0e-67 257.3 177 75.7
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.0e-67 257.3 176 75.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.2e-66 256.9 177 73.4
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-66 256.5 178 72.5
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.4e-66 255.4 176 75.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 4.5e-66 255.0 177 74.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.5e-66 255.0 177 72.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.5e-66 255.0 176 74.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 5.8e-66 254.6 177 73.4
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 9.9e-66 253.8 177 72.3
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 9.9e-66 253.8 177 73.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.7e-65 253.1 177 71.8
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.7e-65 253.1 177 74.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.7e-65 253.1 177 72.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.7e-65 253.1 177 75.1
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.7e-65 253.1 177 72.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.4e-64 250.0 177 72.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.4e-64 249.2 177 72.9
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.2e-64 248.8 177 75.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.2e-64 248.4 177 71.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.2e-64 248.4 177 71.8
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.2e-64 248.4 177 71.8
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 7.1e-64 247.7 215 64.2
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 9.3e-64 247.3 177 74.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.2e-63 246.9 160 78.1
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-63 246.1 177 73.4
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.7e-63 245.7 177 71.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.7e-63 245.7 176 74.4
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 4.6e-63 245.0 161 77.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.9e-63 244.2 177 70.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.0e-62 243.8 177 70.6
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.0e-62 243.8 160 78.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.0e-62 243.8 160 77.5
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-62 243.0 206 63.6
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.0e-62 242.3 154 79.9
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.9e-62 241.9 160 77.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.9e-62 241.9 177 68.9
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 6.7e-62 241.1 177 69.5
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.1e-61 240.4 160 76.9
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.1e-61 240.4 166 75.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.5e-61 240.0 159 76.1
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.9e-61 239.6 177 68.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.5e-61 239.2 177 69.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.6e-61 238.0 161 75.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 9.6e-61 237.3 166 75.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-60 236.9 222 59.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.1e-60 236.1 177 71.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.1e-60 236.1 177 69.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-60 235.7 177 67.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.7e-60 235.3 182 65.4
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 4.8e-60 235.0 163 74.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 4.8e-60 235.0 177 66.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.2e-60 234.6 177 67.8
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 5.3e-59 231.5 178 72.5
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.5e-58 229.9 236 55.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.5e-58 228.4 158 73.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-57 226.5 177 62.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.2e-57 226.1 161 70.8
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.2e-56 222.2 175 69.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 5.5e-56 221.5 142 84.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 7.1e-56 221.1 142 83.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 7.1e-56 221.1 142 83.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-55 219.9 142 83.1
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-55 218.8 185 67.6
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.6e-55 218.4 160 70.0
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.3e-54 216.9 183 66.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.0e-54 215.7 160 70.0
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.0e-54 215.7 160 68.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.0e-54 215.7 177 61.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-54 215.7 144 81.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.5e-53 212.6 177 65.0
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-52 209.5 132 83.3
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.8e-52 209.1 178 63.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 6.3e-52 208.0 176 63.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-51 207.2 137 73.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.4e-51 206.1 132 82.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.6e-50 202.6 142 72.5
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.6e-50 201.1 135 74.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 6.5e-49 198.0 134 75.4
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 5.5e-48 194.9 178 62.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.7e-47 192.6 165 61.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.0e-46 189.1 132 76.5
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.3e-45 185.3 157 63.1
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.3e-44 181.4 147 67.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.3e-44 181.4 200 50.0
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.0e-42 176.4 170 60.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.0e-41 174.1 144 61.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.3e-38 162.9 104 83.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.9e-38 162.2 117 75.2
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-38 161.0 101 85.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.6e-31 140.2 101 67.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.1e-31 139.8 80 91.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 6.3e-28 128.3 123 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.9e-26 121.7 86 68.6
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-25 120.2 73 86.3
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.8e-25 119.0 90 67.8
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-23 112.5 114 55.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.7e-23 112.1 79 70.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-20 102.8 72 70.8
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.0e-19 98.2 74 63.5
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.9e-18 95.1 64 73.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-15 87.4 65 69.2
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-15 85.5 68 57.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.2e-13 80.9 162 30.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.5e-13 80.5 137 35.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.4e-13 79.3 49 83.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.4e-13 79.3 49 83.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-12 76.6 119 47.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.3e-09 66.6 109 38.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.5e-08 62.0 44 65.9


User provided reference genes

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