Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 9.0e-207 723.4 378 100.0
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 8.3e-176 620.5 378 86.2
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 7.7e-174 614.0 378 84.1
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.8e-162 576.2 379 80.7
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.8e-162 576.2 379 80.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.5e-161 570.9 378 80.2
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.9e-160 568.9 378 80.2
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.4e-152 541.2 378 76.2
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 3.6e-147 525.4 384 76.6
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 4.0e-146 521.9 382 75.4
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 7.5e-145 517.7 370 77.0
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 7.8e-142 507.7 397 71.8
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.5e-140 502.7 387 72.1
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 4.3e-140 501.9 384 72.4
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.6e-139 500.0 377 70.6
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 6.8e-138 494.6 383 70.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 2.6e-137 492.7 331 79.8
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 2.6e-137 492.7 381 70.1
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.6e-137 492.7 380 71.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.3e-136 490.3 381 69.8
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.2e-136 489.6 381 69.8
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 2.4e-135 486.1 385 69.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 9.2e-135 484.2 384 69.8
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.7e-134 482.6 388 69.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 7.8e-134 481.1 389 70.2
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.3e-133 480.3 385 68.8
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 5.6e-132 474.9 386 69.2
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 5.6e-132 474.9 382 69.1
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.6e-131 473.4 367 71.7
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 3.1e-130 469.2 382 69.6
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 4.0e-130 468.8 378 68.5
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 5.2e-130 468.4 386 67.9
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 5.2e-130 468.4 379 67.5
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 5.2e-130 468.4 378 68.8
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 1.5e-129 466.8 353 72.5
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 1.5e-129 466.8 425 64.2
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 4.4e-129 465.3 379 67.3
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.3e-128 463.8 379 68.3
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 2.9e-128 462.6 383 67.6
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 3.8e-128 462.2 378 68.5
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 8.4e-128 461.1 387 65.9
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 1.9e-127 459.9 383 67.4
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.9e-127 459.9 330 76.1
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 1.9e-127 459.9 363 69.4
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.4e-127 459.5 378 67.2
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 3.2e-127 459.1 379 67.8
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 9.3e-127 457.6 362 70.2
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 1.2e-126 457.2 318 76.7
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.2e-126 457.2 405 64.2
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 2.1e-126 456.4 405 65.4
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 2.7e-126 456.1 364 69.0
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 3.5e-126 455.7 385 66.2
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 6.0e-126 454.9 384 66.7
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 6.0e-126 454.9 384 68.2
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 7.8e-126 454.5 398 65.8
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 7.8e-126 454.5 378 67.2
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 1.7e-125 453.4 380 67.4
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 1.7e-125 453.4 380 67.4
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.7e-125 453.4 379 66.2
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 5.6e-124 448.4 385 66.2
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.6e-123 446.8 328 74.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 3.6e-123 445.7 313 77.0
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 8.1e-123 444.5 321 75.1
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.4e-122 443.7 379 66.2
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.8e-122 443.4 381 65.9
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 3.1e-122 442.6 377 66.8
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 3.1e-122 442.6 342 71.3
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 4.0e-122 442.2 322 74.2
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 4.0e-122 442.2 341 70.1
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 5.3e-122 441.8 259 86.9
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 6.9e-122 441.4 377 66.8
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.2e-121 440.7 319 74.3
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 5.8e-121 438.3 303 77.6
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.7e-120 436.8 381 64.8
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.7e-120 436.8 346 70.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 2.2e-120 436.4 381 66.1
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 5.4e-119 431.8 379 66.0
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.2e-118 430.6 386 64.0
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.1e-118 429.9 315 74.3
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 3.9e-117 425.6 394 65.2
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 5.1e-117 425.2 317 73.2
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 2.1e-115 419.9 247 87.0
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.4e-111 406.4 329 68.1
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.0e-109 401.0 353 63.5
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 5.6e-108 395.2 331 66.2
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.8e-107 392.9 425 56.5
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 6.2e-107 391.7 389 58.4
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 4.0e-106 389.0 425 54.8
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 6.9e-106 388.3 345 63.5
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.5e-105 387.1 361 64.3
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 2.6e-105 386.3 430 53.7
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 5.8e-105 385.2 330 63.9
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.9e-103 380.2 267 73.0
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 4.2e-103 379.0 360 58.9
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 7.1e-103 378.3 261 77.4
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 2.1e-102 376.7 333 66.1
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 3.0e-101 372.9 397 57.2
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 2.5e-100 369.8 295 70.5
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 2.5e-100 369.8 288 67.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 3.3e-100 369.4 303 64.7
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.0e-97 360.1 209 88.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.0e-96 357.8 328 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 4.2e-95 352.4 304 60.9
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 2.4e-90 336.7 319 62.1
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 7.2e-87 325.1 424 50.7
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 4.1e-82 309.3 304 61.5
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 4.1e-82 309.3 393 51.7
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 7.4e-76 288.5 370 46.2
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 2.8e-75 286.6 263 55.9
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 4.8e-75 285.8 178 83.1
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 4.5e-73 279.3 268 59.0
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.5e-71 274.2 301 53.2
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 1.6e-70 270.8 258 58.5
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.1e-70 270.4 187 72.7
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 3.3e-68 263.1 319 48.0
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.0e-64 251.5 157 79.6
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.8e-61 240.7 263 49.8
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.3e-56 223.8 129 85.3
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.3e-56 223.8 130 88.5
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.1e-54 217.2 136 77.9
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.4e-50 204.5 115 91.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.0e-40 171.8 108 78.7
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.2e-38 164.9 251 37.8
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-29 132.1 187 39.6
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 2.9e-27 127.1 176 42.6
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.6e-25 121.3 80 81.2
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 2.1e-22 110.9 90 65.6
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.2e-17 95.1 152 46.7
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 5.8e-12 76.3 41 95.1
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 7.6e-12 75.9 99 50.5
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 1.6e-09 68.2 240 26.2
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 5.1e-08 63.2 36 83.3
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 2.5e-07 60.8 51 58.8
SEGI_18043 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.1e-06 57.8 59 50.8


User provided reference genes

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