Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 9.1e-46 186.8 113 100.0
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 3.7e-15 85.1 57 71.9
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 1.1e-14 83.6 58 70.7
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 1.6e-13 79.7 58 67.2
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.1e-11 73.6 54 66.7
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.5e-11 72.4 53 66.0
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 2.5e-11 72.4 41 73.2
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 3.3e-11 72.0 54 63.0
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 3.3e-11 72.0 45 66.7
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.2e-10 70.1 56 58.9
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 1.6e-10 69.7 45 68.9
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 3.6e-10 68.6 33 84.8
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 4.7e-10 68.2 33 84.8
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 6.2e-10 67.8 45 66.7
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 6.2e-10 67.8 56 55.4
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 6.2e-10 67.8 34 79.4
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.2e-10 67.8 36 77.8
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.2e-10 67.8 36 77.8
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 6.2e-10 67.8 50 64.0
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 8.1e-10 67.4 34 79.4
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.1e-09 67.0 48 66.7
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 1.1e-09 67.0 43 69.8
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 1.1e-09 67.0 53 56.6
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 1.4e-09 66.6 52 57.7
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 1.4e-09 66.6 46 58.7
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 1.4e-09 66.6 32 84.4
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 1.4e-09 66.6 35 74.3
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 1.8e-09 66.2 32 81.2
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 1.8e-09 66.2 55 60.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.3e-09 65.9 55 54.5
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.3e-09 65.9 37 78.4
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.1e-09 65.5 34 79.4
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 4.0e-09 65.1 43 67.4
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.0e-09 65.1 54 48.1
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 5.2e-09 64.7 47 61.7
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.2e-09 64.7 36 75.0
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 5.2e-09 64.7 55 50.9
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.2e-09 64.7 32 81.2
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 6.8e-09 64.3 47 61.7
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 6.8e-09 64.3 47 61.7
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 6.8e-09 64.3 47 61.7
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 6.8e-09 64.3 47 61.7
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 8.9e-09 63.9 44 63.6
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 8.9e-09 63.9 45 64.4
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 8.9e-09 63.9 45 64.4
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 8.9e-09 63.9 45 64.4
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 8.9e-09 63.9 50 62.0
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 8.9e-09 63.9 45 62.2
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 8.9e-09 63.9 41 65.9
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 8.9e-09 63.9 32 84.4
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 1.2e-08 63.5 34 76.5
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 1.5e-08 63.2 33 75.8
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 1.5e-08 63.2 34 73.5
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.5e-08 63.2 33 75.8
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 2.0e-08 62.8 34 73.5
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 2.6e-08 62.4 45 62.2
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 2.6e-08 62.4 52 55.8
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.4e-08 61.6 49 53.1
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 5.8e-08 61.2 33 72.7
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 5.8e-08 61.2 33 72.7
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 5.8e-08 61.2 33 72.7
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 9.9e-08 60.5 34 70.6
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 1.7e-07 59.7 45 57.8
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 1.7e-07 59.7 47 59.6
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 1.7e-07 59.7 34 64.7
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.7e-07 59.7 49 51.0
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.2e-07 59.3 35 65.7
ClCG04G009250 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.2e-07 59.3 41 65.9
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 2.2e-07 59.3 34 64.7
CsaV3_6G039840 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.7e-07 58.5 32 75.0
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 4.9e-07 58.2 34 64.7
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 8.3e-07 57.4 32 65.6
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 57.0 34 61.8
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 57.0 31 67.7
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 57.0 34 61.8
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 57.0 31 67.7
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-06 57.0 34 61.8
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-06 57.0 31 67.7
Lsat_1_v5_gn_6_25220 Lactuca sativa HOM05D001415 ORTHO05D001075 1.1e-06 57.0 30 73.3
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 1.4e-06 56.6 56 48.2
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 1.4e-06 56.6 34 58.8
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 1.4e-06 56.6 34 58.8
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-06 56.2 45 46.7
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-06 56.2 45 46.7
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-06 56.2 45 46.7
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.9e-06 56.2 36 58.3
Os01g0844200 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 1.9e-06 56.2 42 52.4
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 64.5
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.4e-06 55.8 35 60.0
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.4e-06 55.8 35 60.0
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 2.4e-06 55.8 35 60.0
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 71.0
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 64.5
TPR.G20214 Trifolium pratense HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 71.0
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.2e-06 55.5 30 83.3
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.2e-06 55.5 30 83.3
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.2e-06 55.5 30 83.3
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 3.2e-06 55.5 53 39.6
Sed0009419 Sechium edule HOM05D001415 ORTHO05D001075 3.2e-06 55.5 33 69.7
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 4.1e-06 55.1 41 51.2
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 5.4e-06 54.7 49 57.1
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 5.4e-06 54.7 49 57.1
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 5.4e-06 54.7 48 45.8
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 5.4e-06 54.7 56 39.3
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.4e-06 54.7 35 57.1
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.4e-06 54.7 28 82.1
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.4e-06 54.7 28 82.1
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.4e-06 54.7 28 82.1
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.4e-06 54.7 36 55.6
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.4e-06 54.7 34 55.9
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 7.1e-06 54.3 36 50.0
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.1e-06 54.3 38 50.0
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 7.1e-06 54.3 36 52.8
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 7.1e-06 54.3 34 55.9
HPP92_026000 Vanilla planifolia HOM05D001415 ORTHO05D001075 7.1e-06 54.3 44 56.8
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-06 53.9 39 64.1
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-06 53.9 39 64.1
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-06 53.9 39 64.1
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 9.2e-06 53.9 39 64.1
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 9.2e-06 53.9 39 64.1
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 9.2e-06 53.9 45 55.6
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 9.2e-06 53.9 49 49.0
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 9.2e-06 53.9 35 54.3
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 9.2e-06 53.9 37 51.4
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 9.2e-06 53.9 37 51.4
Lsat_1_v5_gn_2_106661 Lactuca sativa HOM05D001415 ORTHO05D001075 9.2e-06 53.9 40 62.5
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 9.2e-06 53.9 38 50.0
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 9.2e-06 53.9 41 48.8
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 9.2e-06 53.9 38 44.7


User provided reference genes

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