Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 0.0e+00 1562.4 1056 100.0
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 0.0e+00 1310.8 1046 88.7
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 0.0e+00 1207.6 1086 82.1
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 0.0e+00 1137.1 1084 79.9
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 0.0e+00 1136.3 1084 79.8
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 0.0e+00 1129.8 1074 79.8
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 0.0e+00 1115.9 1074 79.5
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 0.0e+00 1102.4 1063 77.6
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 0.0e+00 1097.4 1049 79.6
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 0.0e+00 1088.2 1108 75.5
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1083.6 1050 77.9
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1083.6 1050 77.9
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 0.0e+00 1078.9 1113 74.6
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 0.0e+00 1076.2 1111 74.9
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1075.5 1050 76.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.4e-310 1069.7 1053 76.9
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 9.3e-310 1067.0 1043 76.6
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 7.9e-309 1063.9 1108 74.2
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 2.3e-308 1062.4 1046 78.2
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 5.1e-308 1061.2 1117 74.2
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.4e-305 1053.1 1042 76.0
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 2.4e-305 1052.4 1043 77.6
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.0e-305 1050.4 1076 76.4
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 9.0e-305 1050.4 1100 73.7
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 2.0e-304 1049.3 1047 77.3
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 3.4e-304 1048.5 1042 75.6
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.2e-303 1045.8 1052 76.9
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 4.6e-301 1038.1 1110 73.8
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.3e-300 1036.6 1042 75.7
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 3.0e-300 1035.4 1047 76.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 5.1e-300 1034.6 1128 72.4
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.6e-298 1029.6 1049 74.5
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.6e-298 1029.6 1115 72.8
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.6e-298 1029.6 1112 72.8
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.2e-298 1029.2 1099 73.7
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.8e-298 1028.9 1046 77.2
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.8e-298 1028.9 1046 76.7
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 6.3e-298 1027.7 1115 72.9
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 6.3e-298 1027.7 1047 75.5
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.8e-297 1026.2 1064 74.6
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.0e-296 1022.7 1115 72.6
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 7.2e-294 1014.2 1051 74.6
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 4.6e-293 1011.5 1108 71.4
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.0e-292 1010.4 1060 74.1
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 2.3e-292 1009.2 1049 74.7
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 9.7e-291 1003.8 1060 74.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 8.2e-290 1000.7 1046 75.0
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 2.6e-288 995.7 1060 74.0
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 5.9e-288 994.6 1046 74.2
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 8.5e-287 990.7 1114 72.0
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.6e-285 985.3 1045 63.4
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 6.1e-285 984.6 1042 74.5
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.4e-284 983.4 1041 75.1
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 6.3e-282 974.5 1090 70.2
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 5.3e-281 971.5 1057 72.7
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.2e-280 970.3 1049 72.7
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 1.7e-279 966.5 1049 72.4
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 2.1e-277 959.5 1044 73.3
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 4.8e-274 948.3 1046 73.3
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.3e-271 940.3 1052 71.3
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.7e-271 939.9 1049 71.2
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.9e-270 936.4 1214 50.9
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.6e-269 932.2 1065 68.8
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 4.0e-268 928.7 1043 71.8
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 4.0e-268 928.7 1081 67.3
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 3.4e-267 925.6 1091 68.9
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 3.4e-267 925.6 1053 71.2
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.7e-266 923.3 1054 71.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.1e-265 920.6 1075 67.7
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.8e-265 919.8 1052 72.6
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.4e-265 919.5 1075 67.6
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 2.0e-264 916.4 1046 71.4
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 2.9e-263 912.5 1062 64.8
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.5e-262 910.2 1052 67.5
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.5e-262 909.4 1055 70.6
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 4.2e-262 908.7 1046 70.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 5.5e-262 908.3 1082 67.7
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 8.8e-260 901.0 1063 68.1
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 7.5e-259 897.9 1067 67.2
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.3e-258 897.1 1069 64.4
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.4e-257 892.9 1043 71.4
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.3e-255 887.1 487 87.5
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.1e-254 884.0 1060 69.5
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 7.3e-254 881.3 885 79.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 4.4e-251 872.1 1036 67.8
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 4.4e-251 872.1 1138 48.0
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 2.2e-250 869.8 1071 66.2
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 1.4e-249 867.1 1042 68.8
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 2.5e-246 856.3 1044 68.4
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 3.3e-246 855.9 1052 69.8
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 2.1e-245 853.2 922 77.5
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 4.7e-245 852.0 485 85.4
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 9.8e-235 817.8 488 79.9
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 3.8e-226 789.3 487 77.8
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.2e-225 786.2 826 67.1
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 5.2e-220 768.8 984 62.4
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 7.1e-209 731.9 488 72.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 6.7e-207 725.3 1054 59.0
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 6.7e-207 725.3 1050 55.8
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 9.6e-198 694.9 1046 61.7
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 4.8e-189 666.0 918 66.6
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.0e-175 621.7 482 62.9
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.1e-172 611.7 981 56.8
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.4e-172 610.5 845 71.8
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 8.0e-152 542.3 777 74.3
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.4e-140 505.0 336 80.7
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.3e-138 498.4 442 60.0
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 5.2e-135 486.5 1051 44.6
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.8e-132 478.0 1035 47.2
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 4.9e-117 426.8 252 78.2
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.0e-102 378.3 711 60.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.8e-101 374.0 374 59.9
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 6.0e-99 366.7 537 38.9
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 5.6e-97 360.1 304 59.9
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 2.9e-93 347.8 912 34.5
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 9.0e-87 326.2 201 76.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 2.5e-81 308.1 348 54.0
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.1e-73 282.7 298 57.7
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 9.0e-71 273.1 453 36.0
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 7.9e-67 260.0 267 55.8
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 3.0e-66 258.1 168 75.0
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 4.5e-62 244.2 911 29.4
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.5e-49 202.6 228 54.8
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 6.5e-45 187.2 99 85.9
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 2.7e-43 181.8 133 60.2
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.7e-41 174.1 191 55.0
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 9.7e-41 173.3 139 61.9
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 1.7e-40 172.6 139 61.9
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 2.2e-40 172.2 181 52.5
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.5e-38 164.5 113 75.2
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.5e-36 158.7 92 84.8
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 9.4e-36 156.8 123 70.7
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 4.4e-33 147.9 89 77.5
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.3e-29 136.3 76 89.5
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.9e-28 132.5 74 75.7
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.2e-27 129.8 92 67.4
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 1.3e-24 119.8 105 61.0
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.8e-18 99.4 132 44.7
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.0e-13 83.6 145 36.6
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.5e-12 79.0 192 35.4
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.1e-10 72.0 40 85.0
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.9e-08 65.5 43 74.4
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 1.4e-07 63.2 246 27.2
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 5.4e-07 61.2 49 46.9
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 7.8e-06 57.4 133 34.6
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 7.8e-06 57.4 44 65.9


User provided reference genes

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